Spinacia oleracea (spinach): 110782541
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Entry
110782541 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110782541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110782541
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110782541
Spliceosome [BR:
soe03041
]
Complex A
U2 snRNP components
U2 related factors
110782541
Complex B
110782541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
110782541
NCBI-ProteinID:
XP_021842403
UniProt:
A0A9R0I4M3
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All DBs
Position
5:4629969..4634956
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AA seq
1164 aa
AA seq
DB search
MGESEDVKSKSRKEDSETKEESKRSRVREHDKERDKDKGRNGEKERRRDREKERDRESRR
SERDRSVDDKHRERERERDKGKHRDKHRDRDREKERKKDQKDRDGDREDKEKERDKEKAK
EKEREREEREREREKEREREREREREREKEREKERERERERERERERRERERERERERER
REREKERERAERDKEKEKERERERRRREAASDDSGDERKDRDRKRRRRDDENKERERERS
KSRDREKSRSHKHRSGSVDSQKKKGDDEPDRSQEIMERKEQDMEEEQRRLDDEMEKRRRR
VQEWQELKRKKEEDERKQLGDANDEEPKAGKNWTLEGESDDEEAATEGQSDADMDVDRDF
KPPTEAGDPMAIDVENENKLENVLPNGGADVPEEDDIDPLDAFMNSMVLPEVEKLSSSVL
DTENAELNGKEEIVEQSNVEVSKKAPKKYLGRIMPEEDSDPDYEDQEDGGTNLEDEDDDE
FVKRVKKTKAEKLALVDHSKIDYIDVRKNFYIEVKDIARMALEDVDSYRTELELKVHGKD
VPKPIKTWHQTGLTTKILEVIRKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAF
VLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHNDIKKFAKVMNLTSVPVYGGSGVA
QQIGDLKKGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRI
VQNIRPDRQTVLFSATFPRQVEVLAKKVLNKPVEIQVGGRSVVNSDITQMVEMRPENERF
LRLLELLGEWYEKGKILVFVQSQDKCDALFRDLLKSGYPCLSLHGGKDQGDRESTLADFK
SNVCNLLIATSIAARGLDVKDLELVLNYDAPNHYEDYVHRVGRTGRAGRKGHAITFISED
EAKYAPDLVKALELSEQPVPQDLKLLADGFAVKVKEGLEQAHGTGFGGSGFKFDEQEDEA
RKAAKKAQAKEYGFEFDKSDSEDEDDEVRKRSDVTVPTPVLGGQGQPDTTGHNVSGQGTI
GSVPGSILSSINSSDNPALAVAVAAAMKLQQNLAKLQQDAMPEHYEAELEINDFPQNARW
KVTHKETLGPISDWTGAAITTRGQYYPPGKIAGPNERKLYLFIEGRSEHSVKTAKAELKR
VLEDITSQAISLPGGAQPGRYSIL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgggggaatcagaggatgtgaaatcgaagtcgaggaaggaagattctgagacaaaagag
gagtcgaaacggagtcgtgtgcgtgaacatgataaggaaagggataaggataagggaagg
aatggggaaaaggagaggaggagagacagggagaaagagagggatagggagagtaggcgg
tctgagagagataggagtgttgatgataagcatagggagcgggaaagagagcgagataaa
gggaagcacagggataaacacagggatagggatagggagaaggagcggaaaaaagaccag
aaggatagggatggggatagagaagataaagagaaagagagggacaaggagaaggcaaag
gaaaaggaaagagaacgagaggaaagagaaagggagcgggagaaagaaagggaaagggaa
agggaaagggagagggagagggagaaagaacgggaaaaagagagggagagagaaagggaa
cgggaacgggagagggagcgcagggaaagagagagggagagagaaagagaacgcgagagg
agagaacgagaaaaggagagggagagggcagaaagagataaggagaaggagaaggagagg
gagagggagaggaggcgtcgtgaagcagcaagtgatgacagtggtgatgagaggaaggac
agagataggaaacggcgaaggagagatgatgagaacaaggagagagagcgagaaaggagc
aaatcaagagatcgagaaaagagcagatcacataagcaccgaagtggtagtgtggacagc
cagaagaagaagggtgatgatgagcctgacagaagtcaggagataatggagagaaaggaa
caagacatggaagaggaacaaaggagattggatgatgagatggaaaaacggaggaggaga
gttcaggaatggcaggaattgaaaaggaaaaaggaagaagatgaaagaaagcagcttggg
gacgcaaatgatgaagaacctaaagcaggtaagaactggacattagaaggcgaatcggat
gatgaagaagctgctacagaggggcaatcagatgcagatatggatgtcgatagagatttt
aaaccgccaactgaagctggagaccccatggctattgatgttgagaatgagaataagctt
gagaatgtgttacctaatgggggtgctgatgtacctgaagaagatgatattgatcctctg
gatgcttttatgaactctatggtgttgcctgaagtagagaagctgagtagttctgtgctt
gatacagagaatgctgaactgaatggcaaggaggaaattgttgaacaaagcaatgttgag
gtctctaagaaagcaccaaaaaagtatcttggaagaataatgcctgaagaggattctgac
cctgattatgaggatcaagaagatggtggaacaaacttagaggatgaagatgatgatgag
tttgtgaaaagggtgaagaagactaaagctgagaaactagccctggttgatcattcgaag
attgattatatagacgtcagaaagaatttttacattgaagtaaaggatattgcaaggatg
gctcttgaggatgttgattcttacaggacggagctggagctgaaagttcatggaaaagat
gttccaaagccaatcaaaacctggcaccaaactgggctgacaacaaaaattttggaggtg
attagaaagatgaactttgagaagccaatgccaatccaagctcaggctttgcctgtaatt
atgagtggtcgagattgcattggtattgcaaaaactggttcgggaaagaccttggctttc
gtgttgcctatgttgagacatataaaagatcagccacctttgatgtctggagatggtcca
ataggacttattatggcccctacaagagagctggtccagcaaattcacaatgatattaag
aagtttgccaaagtaatgaatttgacctctgttcctgtatatggtggctctggtgttgcg
cagcaaataggtgatctgaagaagggagcggagattgttgtatgtacccctggtagaatg
atagatatactgtgtacaagtagtgggaaaatcacgaatcttagaagagtcacttttttg
gtaatggatgaagctgacaggatgtttgatatgggttttgaacctcagataacgagaatt
gtccagaatataagaccggaccgtcaaactgttttattttccgccacctttcctcgtcag
gttgaggttttggcaaagaaagtcctgaataaaccggtggaaatccaggttggtgggagg
agtgttgtcaacagcgacataactcaaatggtagaaatgaggcctgaaaatgaaaggttt
cttagactactggaactacttggggagtggtacgaaaaggggaagattctggtgtttgtc
caatctcaagataaatgtgatgccttgttccgggatttacttaagagtggttatccctgt
ctttctcttcacgggggaaaagatcagggggaccgtgaatccaccctcgctgattttaag
agtaatgtttgcaacttgttgatagctaccagcattgctgctaggggtctggatgtgaaa
gatctcgagctagttcttaattatgatgcccctaatcactatgaagattatgttcatcga
gttggcaggacaggtcgtgctggacgcaaggggcatgctattacttttatctctgaagat
gaagcaaaatatgctcctgatctagtaaaagcattggaactctcagagcagcctgtacca
caggatctgaaattacttgctgatgggttcgcggtaaaggtgaaagagggtcttgagcaa
gctcatggaactggttttggtggaagtgggttcaagtttgatgagcaagaggatgaagca
cggaaagctgcaaagaaagcacaggctaaagagtatggatttgagtttgacaagtcggat
tcagaggatgaggatgatgaagtccgcaagaggtcagatgttactgtaccaacccctgtt
cttggtgggcaagggcaaccagataccacagggcataatgtctcagggcaaggcacaatt
ggctcagttcctggctctattctgtcgtctattaactcatcagataatcccgctttggca
gttgcggttgctgcagcaatgaagttacaacagaacttagccaagctgcaacaagatgca
atgcctgagcattatgaggcggaactcgagatcaatgatttcccacagaacgctcgatgg
aaggtgacccataaggagactttgggtcctatttctgattggactggagctgccattaca
actaggggccagtattatcctcctggaaagattgctggtcctaatgaacgcaaactttat
ctgttcatcgagggacgttcagagcattcagtcaagacagctaaagcggaactgaagaga
gttttggaggatatcacttcacaagccatctctcttccaggtggtgcccaaccaggcagg
tattctattctctga
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