Spinacia oleracea (spinach): 110783214
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Entry
110783214 CDS
T05137
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110783214
09122 Translation
03013 Nucleocytoplasmic transport
110783214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110783214
03041 Spliceosome [BR:
soe03041
]
110783214
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110783214
Spliceosome [BR:
soe03041
]
Complex C
Other components
EJC/TREX
110783214
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110783214
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
110783214
NCBI-ProteinID:
XP_021843214
UniProt:
A0A9R0I807
LinkDB
All DBs
Position
3:complement(62932981..62983382)
Genome browser
AA seq
1844 aa
AA seq
DB search
MSLPSIQCAYITDDFLHQLKIGDPNFKLPNPVPALRFLFELVSSMVHGALPFQKCKAALD
AVRFSDVVTEEELGSYFADIVTQLALDLTLPGEIRARLIKLARWLVECSLVPVRCFQERC
EEEFLWECEMVKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCEGSGAP
NSSSSMIGTIKSLIGHFDLDPNRVFDIVMECFEMHPHNRLFLDLIPIFPKSHASQILGFK
FQYYQRIEVQDPLPFGLYQLAAVLVKEDLVDLDSIYAHLIPKDEEAFETFNVVSTRRLDE
ANKIGKINLAATGKDLMDDEKQADVTVDLYAALDLENLAVNESVLELEDCQTLGLLTGFL
RVDDWYHANILFERLSPLTPVAYAQICDGLFRLIGRSISSAYDTACKLHHANNTINGPKV
LGSADSLSSSLVLLPKELFEMLACAGPYLYRDTLLLQKVCRVLKGYYLSALELISKGDGA
LIPVGGDNINPRLHLREARSKIEEALGSCLLPSLQLVPANPAIGHAIWEVMSLLPYEARY
RLYGEWEKDDERIPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPLTVLRT
IVQQIEAYRDMIMPVVDAFKYLTQLEYDVLEYVVIERLAQSGREKLKDDGLNLSDWLQSL
ASFWGHLCKKYPSMELRGLFQYLVNQLKRGRGIELLLLQELIQQMANVQYTENMTEEQLD
SMAGGETLRYLATSYGVSRNNKALIKSTNRLRDSLVPKEEPKLAIPLLLLIAQHRSLVVT
NADAPYIKMVCEQFDRCHGILLQYVDFLCSAVNPATAYAQLVPTLDDLVHQYHLDPEVAF
LIYRPVMRLFKCKNSSVTWPLCDRDEPSGAGDLVLDLGPPRHPVRWSHLLDTIRTMLPSK
AWNSLSPDLYATFWGLTLYDLYVPRSRYESEIAKQHAALKALEEFSDNSGSAIAKRKKDK
ERIQESLDRLMSELQKHEENVASVRRRLANEKDTWLSSCPDTLKINMEFLQRCIFPRCIF
SMQDAVYCAMFVHTLHSLGTPFFNTVNHLDVLICKTIHPMICCCTEYEAGRLGRFLFETL
KIAYSWKSDESVYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLE
SAEYMEIRNALIMLTKISSVFPVTRKSGINIEKRVAKIKGEEREDLKVLATGVAAALAAR
KPSWITEDEFGMGYVELKSGPSVAPKSSTGNGVSQSEPTGGRVASEAQPLDSGSSLKDQA
IRVKPIDGKLERSENISGSVKKGGSMTNGPDVQPFGAHVDEPSNKIVDESIAKGMVMSST
ESEQKNATKRTSAGAGAKALKQEPKDEAKSAKAAGRGIVSGSEREHASHPIEGRQTGQAT
VVSASVANGNSAPSSKGLSSSTKNDFEANELRGEIGPTKSANLRGSLRDDGTDQSDIPRP
QHSRLAHSPRLDAGAKALERQQKRTSPAEEPDRIHKRRKGDSDMRDFEGDVRLTDREKTV
EQRVLDKSYPSELDKSGTEELAFGGVADKHADRTKEKSSEKYEKDHRDRSERSDKLRGDD
ISEKSRDRSMERYGRERSVERVPERRIDRGIDGLNDKVRDERSKDDRAKLRYNEVSGDKS
HSDDRFHCQNLPPPPPLPPHVVPQSVNAGRRDDDAERRLTTTRHNQRLSPKHEEKERRRS
EESMLTAQDDSRRRREDEIRDRKREERETSTIKVEEREREKEKERERERDRAGLSKEEID
STAASKRRKLKREHIPGAEPAEYSPVALPPPISIGMSQAYDGRERGDRKGSMVPRSAYFE
EPGMRIHVKEPTSKMARRDVDPMYERDWDDEKRLRAEAKRRHRK
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccttcgattcagtgtgcttatataacggatgattttctccatcaattgaaa
atcggagaccctaatttcaaattgcccaaccccgttccggcacttcgattccttttcgag
ctcgtttcgtccatggttcatggtgccttgccgtttcagaaatgtaaagcggcgttagat
gcagttcggttttcggatgtggttacggaggaggaattaggttcttattttgcagatatt
gttacccaactggctcttgatctgaccttgcccggggaaattcgagctcgcctaattaaa
ctggcaaggtggcttgtggagtgttcactagttccagtgaggtgttttcaagagcggtgt
gaggaagaatttctctgggagtgtgaaatggtcaagataaaagctcaagaactaaaatct
aaagaggtcagagtgaatactcgtcttctgtatcaacaaacaaagttcaaccttcttcga
gaagagagtgagggctatgctaagctggtgactcttctttgtgagggttcaggagctcct
aactcatcatcctcaatgatcggcactattaagtccttgattggtcacttcgacttggat
ccaaatcgtgtttttgatattgtcatggagtgttttgaaatgcatcctcacaataggctt
ttcttggatctcattccaatttttcctaagtcacatgcttctcaaatcttaggtttcaaa
tttcaatattaccagcgaatagaagttcaagatcccttaccttttgggctgtatcagctt
gcagcagtgcttgtgaaagaagaccttgttgatcttgatagcatatacgcgcatttaatt
cccaaggatgaggaagcgtttgaaactttcaatgtcgtttcaactaggcgtcttgatgag
gctaacaagattggaaaaataaatctagctgcaacgggtaaggaccttatggatgatgaa
aagcaagcagatgtgaccgtagatctttatgctgctttagatttggaaaatcttgctgtc
aatgaatctgttttggagcttgaggactgccaaacattaggcttgcttactggtttcctt
cgtgtggatgattggtatcatgcaaatatcttgtttgagcgtctttcaccacttactcca
gtggcatatgcccaaatttgtgatgggctgttcaggcttattggaagatcaatttcctca
gcatatgatactgcttgtaaattgcatcatgccaacaacaccataaatggcccgaaagtg
ttggggagtgcagattctttgagtagctcccttgttttgctacctaaagagctttttgag
atgcttgcctgtgctggaccttatctgtatcgtgatactctcttgctgcaaaaggtctgt
agggttttaaagggctactacctctcagcacttgaactcatcagtaagggggatggagct
ctcatacctgttgggggtgataatattaatccccggttgcatttgagagaagcaaggtca
aaaattgaggaagcgttgggatcatgtctgcttccttcattgcagttggttcctgcaaat
cctgccattggccatgcaatctgggaagtaatgagtcttcttccatacgaggcgagatat
cgtctctatggtgaatgggaaaaggatgatgagcggatacctatgattttggcagcaaga
caaacagctaagttggacacgaggaggatcttgaaacggcttgcaaaggaaaatctaaaa
caactgggtcgtatggttgctaagcttgctcatgccaatcccttgactgttctccggaca
attgttcaacagattgaggcctatcgagatatgattatgccggttgtggacgcattcaaa
tatttaacacagttggagtatgatgtcttggagtatgtagtgatagagagattggcgcaa
agtggtcgtgaaaagttaaaagacgacgggcttaacttgtcagactggcttcaatctttg
gcttcattttgggggcatctgtgcaagaagtacccttcaatggagctgagaggtcttttt
caataccttgtcaaccaattgaaaaggggccgaggaattgaactcctccttctgcaggag
ttgatacaacagatggcgaatgttcaatacacggaaaatatgacagaggagcagctggat
tccatggcaggtggagagactttgcgatatctggccacatcttatggcgttagccgaaac
aataaggcactgattaaatctacaaacagactcagggactccttggttccgaaggaagaa
ccaaagctggccattcctcttttactgctgattgcacaacaccgttctctggttgttact
aatgcggatgcaccttatataaaaatggtgtgcgagcaatttgacagatgccatggaatt
cttcttcagtatgtggattttctttgtagtgctgttaatccagcaactgcatatgcacaa
ctagtacccactcttgatgatcttgttcatcagtaccatcttgatcctgaggtggccttc
ttgatctatcgaccggttatgaggcttttcaagtgtaaaaatagctcggtcacatggcct
ttgtgtgatcgtgacgagccaagtggtgcgggtgacctggttttggatcttgggcctcct
cgccatcctgtgaggtggtcccatcttcttgatacaattagaactatgttgccatcaaaa
gcgtggaatagcctttccccagatttatatgcaaccttttggggtcttacgttgtatgat
ctgtatgttcctcggagtcgctatgagtctgagattgctaaacagcatgctgctttgaag
gctcttgaagagttctctgataattcaggctctgcaattgcaaagaggaagaaagataaa
gagaggatacaagaatccttagatcgtctcatgagcgagctccaaaaacatgaagagaat
gtcgcttccgtgcgtaggaggcttgcaaatgaaaaagatacctggttgagttcttgccct
gatacattgaagataaatatggagtttctacagcgttgtatttttccacgctgtattttc
agcatgcaagatgctgtttattgtgcaatgtttgtccatactcttcactccttgggcaca
ccatttttcaacacagtcaaccatcttgatgttttaatctgcaaaactatacacccaatg
atatgctgctgtactgagtacgaggctggtagacttggaaggtttttgtttgaaacacta
aaaattgcatattcttggaagagtgatgaatcagtttatgaacgtgaatgtggtaacatg
cctgggtttgcagtttattatagatacccaaatagtcagcgagtgacatacggccagttc
attaaagtgcattggaagtggagtcaaagaatcacccggctgttgatacagtgcttggaa
tctgcagaatatatggaaatccgaaatgccctcataatgttgacaaaaatatcaagtgta
tttccagttactaggaaaagtggaataaacattgagaaacgagtggcgaagattaaaggt
gaagaaagagaagacttgaaggttctagcaactggtgttgcggctgctttggcagctaga
aagccgtcatggattactgaagatgaatttgggatgggatatgttgaattgaagtctggg
ccatcagttgctccaaagtcttccacaggtaatggtgtttctcaaagtgaacctactggg
ggacgagttgcctctgaagctcaacctttggattcagggagttccctgaaagatcaagca
atccgagtgaagcctattgatggaaaactggagaggtcagaaaatatttcagggagtgtt
aagaaaggtggttcaatgacaaatgggccagatgtgcagccatttggagcacatgttgac
gagccttcaaacaagattgtggatgaaagtattgcaaaaggaatggtaatgtcttctact
gaaagcgagcaaaaaaatgctactaaacggacctcagctggagctggtgcaaaggcactt
aaacaagagcctaaagacgaggcaaagtcagcgaaagctgctggaagaggtattgtttct
ggaagtgagagggagcatgcaagtcatcctattgagggaaggcaaaccgggcaagctact
gttgtgtctgcctctgttgctaatggtaattcagctccttcgtctaaaggcttgtcttca
tccacaaaaaatgattttgaagctaatgaattacggggagaaatcggacccacaaagtcc
gctaatttaaggggttctttgagggatgatggcaccgatcaatctgatattcctcggcct
caacattcccgtttagctcattctccgaggcttgatgctggtgcaaaggctttagagaga
caacaaaaaagaactagccctgcagaagaaccagataggatacataaaaggaggaaaggt
gattctgatatgagagattttgagggagatgttcgattgaccgaccgagagaaaacagtt
gagcaaagagtactggacaaatcttatccttcagaattggataagtcagggactgaggaa
ttggcctttggtggggttgctgataaacatgcggataggacaaaggagaaaagtagtgaa
aagtatgagaaggaccacagagatagatctgagcgcagtgataaactccgtggtgatgat
atttctgaaaagtcaagagacagatcaatggaacggtatggaagagagcgctcagtcgaa
agagtaccggagcggaggattgataggggtatcgatggcctcaatgacaaagtcagggat
gaaagaagcaaggatgacagagctaaattgcgttacaatgaagtatctggtgataaatct
catagtgatgatcgatttcattgtcaaaatttgccacctccaccccctttaccacctcat
gtagttccacaatctgtaaatgctggtcgaagagatgatgatgctgaaagaagattgacg
accactagacataaccaaaggctttctcctaaacatgaagaaaaagagcgtcgacggtca
gaggaaagcatgttgactgcgcaagatgattccaggcggagaagagaagatgaaattaga
gatagaaagcgtgaagagcgggagacttcgacaataaaggtggaagagagagaaagggag
aaggaaaaagaacgagaacgggagagggatagagcaggcctttcgaaagaggaaatagat
tcaacagcagcctcaaagagacggaaacttaaaagggagcacattcccggtgcagaacct
gctgagtattcccctgttgctctaccacccccgatttccattggcatgtcgcaggcgtat
gatggtagggaaagaggagatcggaaaggttcaatggttccgcgttcagcgtactttgag
gaaccaggtatgaggatacatgtgaaagaaccaacaagcaagatggcacggcgtgatgtt
gacccaatgtatgaacgtgattgggatgatgagaaaagactgagagctgaagcaaaacgc
cgacacaggaaatga
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integrated database retrieval system
