Spinacia oleracea (spinach): 110783960
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Entry
110783960 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110783960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110783960
03041 Spliceosome [BR:
soe03041
]
110783960
03009 Ribosome biogenesis [BR:
soe03009
]
110783960
03016 Transfer RNA biogenesis [BR:
soe03016
]
110783960
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110783960
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110783960
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110783960
Complex C
U4/U6.U5 tri-SnRNP related factors
110783960
Ribosome biogenesis [BR:
soe03009
]
Eukaryotic type
Pre-60S particles
Helicases
110783960
Transfer RNA biogenesis [BR:
soe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110783960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Calc_CGRP_IAPP
Motif
Other DBs
NCBI-GeneID:
110783960
NCBI-ProteinID:
XP_021844057
UniProt:
A0A9R0I7M3
LinkDB
All DBs
Position
1:complement(117716058..117729642)
Genome browser
AA seq
1037 aa
AA seq
DB search
MAELPSTTTELPSTTTEAPSTMVENPPSSNAPVAEQQTLGKRKQSELEEPVPQQSSLEEQ
QKQQNQKESQESSEKPGSKRRSSTRTCVHEVAVPKDFISDKDSSIHGTLANPSFNGSEAK
KYAFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKAL
SNQKYRELSQEFTDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEI
HYMKDRERGVVWEESIVFLPTAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPT
PLQHYVFPVGGSGLYLVVDENEQFREDNFLKLQDTFVKPGHGMKAAADKASGRIAKAGSG
PKGGSDIYKIVKMIMERKFQPVIVFSFSRRECEQNAMSMSKLDFNTDEEKDIVEQVFKNA
ILCLNEEDRGLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAM
GLNMPAKTVVFTAVKKFDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNS
LRDMVLGKPAPLVSTFRLSYYSILNLMCRAEGQFTAEHVIRNSFHQFQHEKALPEIEKRI
EKLEQEAATLDASGESEVAEYHKLRLDLVLLEKKMMSEITRPERILYYLLPGRLIKIREG
GTDWGWGVVVNVVKKAPAASGAVQRGGGYIVDTLLHCSPSTSDSGSRPKPCPPRPGEKGE
MHVVPVQLPLIAALSKLRLSIPPDLRPVEARQSILLAVQELEKRFPQGLPKLNPVKDMGI
EDKEIVELVSQIEELEQKLFSHPMHKSQDFHQVKCFQQKAEVNYEIQQLKTKMRESQLQK
FRDELKNRSRVLKKLGHIDGDGVVQLKGRAASLIDTGDELLVTELMFNGTFNDLDHHQVA
SLASCFVPCDKSNEQIQLRAELAKPLQQLQDSARRIAEIQRECRLDVNVEEYVESTARPY
LMDVIYCWSKGANFSEVIQMTDIFEGSIIRLARRLDEFLNQLKAAASAVGEANLENKFGE
ASTSLRRGIMFANSLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacttccttcaacaaccacagaacttccttcaacaaccacagaagctccttca
acaatggttgaaaatccaccttcctcaaatgctccagttgcagagcaacaaaccctagga
aagagaaaacaatccgaactagaagaaccggtgccacaacagagctcacttgaagaacaa
caaaagcaacaaaatcagaaagaatctcaggaaagctcagaaaaaccgggatcaaaacgt
cgaagttcaactcgcacttgcgtacacgaagtagcggtgccaaaggatttcatctcagac
aaagattcttcaatccatggaactttggcgaatcctagcttcaatggttcagaggcgaaa
aagtatgcttttactctcgaccccttccaacaggtctcaattgcctgcttagagcggaac
gaatcagtcctagtgtctgcccacacttccgccggtaagaccgccgttgctgaatacgca
attgccatgtcatttcgcgataagcagcgagtaatatacacttcccctctaaaggcgttg
agcaatcagaagtacagggagttgagccaggagttcactgatgttggtcttatgactggt
gatgttactatatctcctaatgctagttgtttggtgatgaccacagagattctccgtgga
atgttgtatcgagggtcggaggtattgaaggaggttgcttgggttatttttgacgagatt
cattatatgaaggatagagagagaggggttgtttgggaggagagtattgttttcttgcct
actgcgattaagatggtgttcttatcagctactatgtcgaatgccactgagtttgctgag
tggatttgtaatattcataagcagccttgccatgttgtatataccgatttccggcctacg
cctttgcagcattatgtatttccggttggtgggtcagggttgtacttggtggtggatgag
aatgagcagtttagggaggacaactttttgaagcttcaggatacatttgtgaagcctggg
catgggatgaaggctgctgctgacaaggctagtgggaggattgccaaagctggttcgggg
cctaaagggggttcagatatctacaagattgtcaagatgatcatggagcgcaaatttcag
cctgtcattgtatttagtttcagtagaagagagtgtgaacaaaatgcaatgtccatgtca
aagcttgactttaatacagacgaagaaaaagatatcgtggagcaggtttttaaaaacgcg
attctctgtttgaatgaagaggacaggggccttcctgcgattgagctgatgttacccctt
cttcaacggggcattgctgtacatcattctgggcttcttccgattattaaagaattggtg
gagctccttttccaagaggggctcgtgaaggccctatttgccactgaaacttttgcaatg
ggcttaaatatgccagcgaaaacagttgtttttacagcagtcaagaaatttgacggtgat
agccatcgttatattggatctggtgaatatattcagatgagtggaagagctggtcgtcgt
ggcaaggatgatcgaggcatttgcattataatggtcgatgagcagatggaaatgaattct
ctgagggatatggtgctgggcaagccagctcctcttgtcagcacttttagattgagctac
tactcaattttgaatctaatgtgccgagctgaaggccaatttactgctgaacatgttatt
agaaattcatttcaccagtttcagcatgagaaggctttgcctgaaattgagaaaaggatt
gagaagcttgagcaagaagctgccacacttgatgcttctggagagtctgaagttgcagaa
taccacaagctaaggcttgatttagtgctacttgagaagaagatgatgtcagagattacg
aggcctgaaagaattctttactatcttcttcctgggaggctgatcaagatacgtgaagga
ggaactgactggggttggggagtcgtggttaatgtggtgaaaaaggcccctgctgcatct
ggagctgtgcagcgtggtggaggctacatagttgatactctgcttcattgctcccctagt
acaagtgatagtggttcaaggcctaaaccatgcccccctcgtcctggtgagaagggtgaa
atgcatgtggttcctgtgcagctgcccttaattgctgctctgagtaagcttcggctttct
atccctcctgaccttcggcctgtggaggcaagacagagcatacttctagctgtacaggaa
ttggaaaaacgttttcctcaaggcctcccaaaacttaatcccgtgaaggatatgggtatt
gaagataaggagattgttgagttggtcagtcaaattgaggaacttgagcagaaattattc
tcgcatccaatgcacaagtctcaagatttccaccaggtgaaatgtttccaacaaaaagct
gaggttaattatgaaattcaacagttaaagacgaagatgcgtgagtctcagcttcaaaag
tttcgggatgagcttaaaaaccggtcacgtgtcttgaagaagcttggtcacatagatggt
gatggtgtagtccagttgaaaggacgagctgcctcattgattgacactggcgatgaactt
ctagttactgaattaatgtttaatggtacatttaatgatctggatcaccatcaagttgcc
tctcttgcaagttgttttgtcccatgtgataaatcaaacgagcagattcagctgcgagca
gaacttgcaaagcccttacaacaactccaagacagtgcaagaagaatagccgagatacaa
cgtgaatgccgcctggacgtaaatgtggaagaatatgttgagtcaactgcgagaccatac
ttgatggatgtgatatactgttggtcaaagggagccaatttttctgaggttatacaaatg
actgatatatttgaaggaagtatcataagactggcgagaaggctagatgagttcttaaat
cagttgaaagctgctgctagtgcagtgggagaggccaatctggaaaacaagtttggagaa
gcaagtaccagcctccgtcgaggtattatgtttgctaattctctgtacttgtag
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integrated database retrieval system
