Spinacia oleracea (spinach): 110784165
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Entry
110784165 CDS
T05137
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110784165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110784165
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110784165
U7-dependent histone pre-mRNA processing factors
110784165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
110784165
NCBI-ProteinID:
XP_021844289
UniProt:
A0A9R0I7W7
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Position
3:2777435..2788519
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLLPLSRVASTVDAVLL
SYPDTLHLGALPYAMKQFGMSAPVYATEPVYRLGLLTMYDHYLSRKQVSEFDLFTLDDID
AAFQNVTRLTYSQNHHLSEKGEGIVIAPHVSGHLLGGTVWKITKDGEDIIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALNNQPPRRQRDHEFLDAIVKTLRSDGKVLLPVDTAG
RVLELILILEQHWAQHHLTYPIFFLTYVSSSTIDYVKSFLEWMNDSIAKSFEHTRDNAFL
LRHVSLLINKGELEKLPEGPKIVLSSMGSLEAGFSHDIFSEWATDPKNLVLFTERGQFGT
LARMLQADPPPKAVKITLSKRVPLVGEELAAYEEEQNRKKEEALKASQIKEEEVKISQSD
PNLGDQMEIDTRETHALSDVGTSVGGHKDVLIDGFVLPATSVAPMFPSFENSAAWDDFGE
VINPDDYMIKEDNMELSFLQGGGDLNGKLDEGSASLMLDTTPSKVVSTELTVQVKCSLVY
MDYEGRSDGRSIKSILAHVAPLKLVLVHGSAEATEHLKQHCSKNVCPHVYAPQIEETIDV
TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGQPEGGMLSLLPLSSTQAPTHKSV
LVGDIKMADFKQFLASKGIQAEFSGGALRCGEFVTLRKVGDPTQKSGVAGNQQIVIEGPL
SEEYYKIRDYLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggtgcaggtgacgccactttgcggtgtgtacaacgagaacccactgtca
tacttggtctccattgatggcttcaacttcctcattgattgcggctggaatgaccacttt
gacccctcccttcttctacctctatctcgggtggcttctactgttgatgctgttctccta
tcatatcctgatacattgcatcttggtgctttgccttatgcaatgaagcaatttgggatg
tccgcaccagtgtatgcaacagagccagtctacagactaggtcttctaactatgtatgat
cactatctttcacgcaagcaagtgtcagagtttgacttgtttacactggatgacattgat
gctgctttccaaaatgtgacacgactgacttattcccagaaccatcatctgtctgaaaaa
ggtgaaggtattgttattgctccacatgtgtctgggcatctacttggaggaacggtgtgg
aagataaccaaggatggggaggatatcatatatgctgtagacttcaatcatcgcaaggaa
aggcatttaaatggaacagttcttgaatcgtttgtacgccctgctgtgctaataacagat
gcttacaatgcattgaataatcaacctccaagacgccaaagggatcatgaattcttagat
gccattgtgaaaacactcagaagtgatggaaaggtattacttccggttgatacagctgga
cgagtactggaacttattttaatactggaacagcactgggctcagcaccatttgacttat
ccaatattcttcctcacatatgtttcctcaagtacaatagactatgtgaaaagtttcttg
gagtggatgaatgattcaatagcaaaatcctttgaacacacacgtgataatgcttttctt
ctgaggcatgtctcgcttttgatcaataagggtgaactggagaaacttcctgaaggtcca
aagattgttctgtcttccatgggaagtcttgaagcaggtttctcccatgacatattttct
gagtgggcaactgatcccaagaatcttgtccttttcaccgaaagagggcagttcggcaca
ttagctcgaatgctgcaggcagatcctcctccaaaagctgttaaaatcacgttatcgaaa
agagtgcctttagtaggagaggagttagcagcatatgaagaagagcaaaaccggaaaaag
gaagaagctttaaaagccagtcaaatcaaagaggaagaagtgaagatatcacaatctgat
cctaatttaggtgatcaaatggagattgatactcgtgaaacccatgctttatcagatgtt
gggacatctgttggtgggcataaggacgttttgattgatggattcgttttacctgcaact
agtgtagccccaatgtttccttctttcgaaaattctgctgcttgggatgattttggtgaa
gtcatcaaccctgatgattatatgatcaaggaagataatatggagctatcattcttacag
ggcggtggggatctcaatggaaaacttgatgagggctccgctagcctaatgcttgatact
actccttccaaagttgtatccactgaactgactgtgcaagtgaagtgttcactggtctac
atggattatgagggtcgctctgatggccgatcaattaagtccattctggctcacgtggct
cctttaaagcttgttttggtgcatggatcagctgaggctactgagcacttgaagcaacat
tgctctaagaatgtttgtccacatgtttatgctcctcaaattgaagaaacaattgatgtc
acttctgatctatgcgcttacaaggtgcaactatcggaaaagttgatgagcaatgttctg
tttaagaagcttggagattacgaaattgcttgggttgatgccgaagttggccaacctgaa
ggtgggatgctttcgttgctcccactctcatcaactcaagccccaacccacaagtcagtt
ctggttggtgacattaaaatggcagatttcaagcagtttttagctagtaaaggcatccag
gcagaattttctggaggtgccttgcggtgtggcgagtttgttaccttacgtaaagttgga
gacccgacccaaaagagtggtgtagctggaaatcagcaaatagttatcgaaggccctcta
tcagaggaatattataagattagggattatctttattcacaattctatttgctctga
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