Spinacia oleracea (spinach): 110784856
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Entry
110784856 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110784856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110784856
03012 Translation factors [BR:
soe03012
]
110784856
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110784856
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110784856
Translation factors [BR:
soe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110784856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
Dicer_dimer
ATPase
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
110784856
NCBI-ProteinID:
XP_021844992
UniProt:
A0A9R0I8W9
LinkDB
All DBs
Position
3:complement(88212739..88231862)
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AA seq
1228 aa
AA seq
DB search
MKDPSPSMVYVPPHQRLRSVITVPSPDSPPNGSPSPFRSRCYDSHQALTSSPSPNFDARI
GINNQNQSGGIGHFQFIQQRNVSPSPNPKQQRREIWNGNTNSFHYKFYSQPKSNLVQYDR
QFSDSQRSSVVDEVSKEGSDREFKEFEPFYSPGFQCAAFADNVEQWKWKLNMLLRDKDKQ
ELTSREKKDRRDFEQIAAMANKMGLYSHSYVKVVVFSKIPLPNYRFDLDEKRPLREVAVD
CSLQRRVDAYLADYLSHKSKSVNVLQVNGISRSSSSGSIATDECLFEQPEPLNLSSSVME
RIIRRRNLQLHDQQLAWEECPDGRKMLEFRQSLPAYKDRDALITAITYNQVIIVSGETGC
GKTTQIPQFILESEIESGRGALCSIICTQPRRISAMSVAERVAIERGEKLGESVGYKVRL
EGIKGRDTRLLFCTTGILLRRLLVDRTLKGITHVIVDEIHERGMNEDFLLIVLKELLSHR
PELKLILMSATLDSELFSSYFGGAPVVNILGFTYPVQTHFLEDILEKSGYKMTPYNQIDD
YGPDRSWKMNKQGIRKRKSQIASVVEDALAAADFREYSTQTRESLSCWNPDSMGFNLIEN
LLYNICENEGPGAVLVFMTGWDDISSLKDKLQAHPILGDPSRVLLLACHSSMASSEQRLI
FEKPEDGVRKIVLATNIAETSITIDDAVFVVDCGKAKETSYDALNNTPCLLPSWISKVSA
QQRRGRAGRVQPGECYHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLSSISEFLS
RALQSPELLAVQKAIEYLKVIGALDANENLTALGRYLTMLPMEPKLGKMLVLGAIFCCLD
PVLTIVAGLSVRDPFLTPMDKKDLAEAAKAQFSRDFSDHLALVRAYDGWKSAEKEYGGYD
YCWKNFLSIQSMKAIDSLRREFYTLLKDTGLVDDKPSSFNGWSHGDKLVRAVICYGLYPG
ICSVLHNEKSLSLKTMEDGQVHLHSNSVNARDAKIPYPWLVFNEKIKVNSVFLRDSTAVS
DSVALLFGGNIVKGETDGHLKMLGGYLEFFMKPGMAETYLNLKRELEDFIQLKLVNPRMD
THAYQDLLFAVRLLVSEDKCDGRFVFCHPNLKPTITKASVSPVVHTLSSRTQSGPGGDNS
KSQLQTLVTRAGYTAPTYEVKQLSNSQFRATVEFNGMQINGRPCNNKKSAEKDAASEALE
WLMGGTQMGNEYVNHMSMLLKKSKRSHN
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatccgtcgccgtctatggtgtacgtgccgccacaccagcggctcaggtcagtg
atcaccgttccttctccagattctccccccaatggctcaccgtctccatttcgcagcaga
tgttacgacagtcatcaagctcttacttcaagccctagccctaattttgatgctagaatc
ggtattaataatcagaatcaaagtggtggaattggacattttcagttcattcaacagcgg
aatgtttctccttctcctaatcctaagcaacagaggagggaaatttggaatgggaatacc
aatagttttcactataagttctacagtcagccgaagagtaacttggttcagtatgatcgc
caatttagtgattcccaacgaagttcggtcgtcgacgaggtttccaaagaagggtctgac
cgcgaattcaaggagtttgagcctttttattctcctgggtttcagtgtgctgcatttgct
gataatgtggagcagtggaaatggaagttaaacatgcttctacgagacaaggataagcaa
gaattgacatccagggagaaaaaggaccgacgtgactttgaacaaatagcagctatggcg
aataaaatggggttatatagccattcgtatgtgaaagtagttgtatttagtaagatccca
ctgccgaactacagatttgatcttgatgagaagcgtcccctgagagaggttgcagttgat
tgtagtttgcaaaggagagtggatgcttatcttgctgactacctttctcataaatctaag
agtgtaaatgttttacaagttaatgggatttcaagatcaagcagtagtggtagtatagca
accgatgaatgtcttttcgagcaaccagaacccctgaatcttagcagttctgtcatggag
agaattattaggcgaagaaacttgcagcttcatgatcagcagcttgcttgggaggaatgc
ccggacggaaggaaaatgctggagttccgccaaagccttccagcatataaggacagagac
gcactgataacagctataacgtataatcaggttatcattgtctctggggaaacaggctgt
ggtaaaactacacaaattccacagtttattttggagtccgaaatagaatctggccgtgga
gctttatgcagtattatatgtactcagccaagaagaatctcagcaatgtcagtggccgaa
agggttgccatagagcggggagagaaattgggagaatctgttggttataaagttcggctg
gaggggataaaagggagagatacgaggcttctgttttgcactacaggcatcttattgcga
agattacttgttgataggactttgaagggcataactcatgttattgtggatgaaattcat
gaacgtgggatgaatgaagattttcttcttattgtgctgaaagagctactttctcataga
ccggagttaaagttgattttgatgagtgcgacattagactctgagctattctcttcttat
tttggtggtgctcctgtggtgaacatcctgggattcacctatcctgttcaaactcatttc
ctagaagatatattggagaagtctggatataaaatgactccttacaatcaaatagatgat
tatgggcctgatagatcatggaagatgaacaaacaaggcataaggaaaagaaagagtcaa
attgcctctgttgtcgaggatgctcttgctgctgctgatttcagggagtacagtacacag
actagggaatctttatcttgttggaatccagattctatggggtttaatcttattgaaaat
ctgttgtacaatatttgtgaaaatgaagggcctggtgctgtgctagttttcatgaccgga
tgggatgacataagctcactcaaggacaaactccaagctcatcccatcttaggagatcca
agtagagtattgttgcttgcttgccacagttctatggcaagttcggaacagaggttaatt
tttgagaaaccagaagatggagtgcggaaaatagtgctggctactaatattgcggagacc
agtatcacaattgatgatgcagtttttgttgttgactgtgggaaggcaaaggagacatca
tatgatgcgttaaataatactccttgcttgcttccttcatggatttcaaaggtttctgca
caacagagaagaggaagggctggtcgtgtacaaccgggagaatgttaccatctctatcca
agatgtgtgtatgatgcttttacagagtaccagcttccagaaatcctgaggacacctttg
cagtctctctgtctgcagatcaaaagtttaaaactcagcagtatctctgagttcctgtcc
agagctctacagtcacccgagctattggcggtccaaaaggctatagaatatttgaaagtc
atcggggcattggatgcaaacgagaatctcactgccctaggtcgctacttgacaatgttg
ccaatggagccaaaacttgggaaaatgcttgtattaggtgctatattttgctgtctggat
cctgtgttgaccattgttgctggcctcagcgtaagagatccttttctgacacccatggac
aagaaagatcttgcagaggctgctaaagctcagttctctcgtgattttagtgaccatctt
gcacttgttcgtgcctatgacggctggaagagtgccgagaaagagtatggtggttatgac
tactgctggaaaaattttctatcaatacagtcaatgaaagctattgattctcttcggagg
gaattctatacattattgaaggataccggattagttgatgataaaccgtcttccttcaac
ggatggagccacggcgacaagcttgtccgtgcagttatatgctacggattgtatccagga
atctgctctgttttgcacaatgagaaatcattatccttaaagacgatggaggatggtcag
gtgcatctgcattcgaattctgtcaatgctcgtgatgcaaaaattccatatccatggcta
gtgttcaatgagaaaataaaagtcaattcagtcttcctccgagattcaactgcagtgtca
gattcagtagcgttactgtttggaggaaacattgtcaaaggggaaacggatggacatctg
aaaatgttaggaggatacttggaatttttcatgaaacctggtatggcggaaacatacttg
aacctaaagagggaactggaggattttatacagctcaaacttgtaaatcccaggatggac
acacatgcttatcaggaccttctgtttgccgtgaggcttcttgtttcagaggacaaatgt
gatggtcggtttgtgttttgccacccgaatctaaagcctacaattactaaagcatccgtc
tcaccagtggtacacactttgtcttctagaactcaaagtggacctggtggtgataactcg
aagagtcagcttcaaaccttagttactagggcagggtatacagctcctacgtatgaagtg
aagcaactgtcaaatagtcagttcagagctactgttgagttcaatggaatgcagatcaat
gggcgaccttgcaacaacaagaagagtgcagagaaagatgcagcttctgaagctctagag
tggctaatgggtgggacccagatgggtaatgagtatgttaatcacatgtcaatgctgctg
aaaaagagcaagaggagtcacaactaa
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