Spinacia oleracea (spinach): 110785053
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Entry
110785053 CDS
T05137
Name
(RefSeq) uncharacterized protein LOC110785053
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110785053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110785053
03041 Spliceosome [BR:
soe03041
]
110785053
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110785053
Spliceosome [BR:
soe03041
]
Complex B
Other components
Prp19-related factors
110785053
Complex C
110785053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_12
TPR_15
TPR_19
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
110785053
NCBI-ProteinID:
XP_021845190
UniProt:
A0A9R0JSR0
LinkDB
All DBs
Position
6:101247485..101255831
Genome browser
AA seq
916 aa
AA seq
DB search
MSIPRELYPSEEDLPYEEEILRNPFSLRLWWRYLVARTASPFKKRAVIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLNNTFERALVTMHKMPRVWIMYLLTLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
INSERWQEGSERLAGVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLPEKARDVFEEGMTTVVTVRDFSVVFDAYSQFEESML
AYKMESLDLSDEEGEDGGDGEEEDDKDIRGDVEHSVGKFEKKILKCFWLHDDNDVDLRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLANARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNFKGA
LDLMRRATAVPSVEVKRRVAAEGYEPVQMKLHKSLKLWTFYVDLEESLDTLESTRAVYES
ILDLRIATPQIIINYAMLLEEHKYFEDAFRVYERGVKIFKYPHVKEIWVTYLSKFVKRYG
KSKLERARELFENAVETAPGECVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPANEKL
SMYEIYIARAAEMFGVPKTREIYEQAIQSGLPDKDVMAMCLKYAELEKSLGEIDRSRTVY
IYASQFADPRSFSDFWNQWHEFEVQHGNEDTFREMLRIKRTVVSSYSQTHFILPELMMQK
DEKISLDTAVDVLKQAGVGEDEMAALERRLAPADNDVPAKDKARTVGFVSAGVESQADTG
RRNVNQEEIELPEESDDDEDDDVEKVEIAQKDVPSAVFGGLAKKREDPEKPEDGDEAKEA
DSRLGALERLKRRKKD
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtccatccctcgggaattgtacccttccgaagaggaccttccctacgaagaagaaatc
ctccgcaaccccttcagtctccgtctatggtggcgctacctagtggcgagaaccgcctct
cctttcaagaagcgtgcagtcatctacgaaagagccctaaaagctttgcctggaagctac
aaactctggtatgcctatcttcgtgaacgccttgaacttgttcgcaatcttccaattacg
cattctcagtatgaaaccctaaataatacttttgaacgtgctttagtaacgatgcataaa
atgccaagagtttggattatgtatttgttaaccctaactcagcagaaattggttactcgt
actcgtcggacgttcgatcgggcgctttgtgctttgcctgttactcagcatgatcgaatt
tgggaaccctatttgatttttgtcagtcagaaggggattccgatcgagacatcacttagg
gtttacaggaggtatttgaagtacgacccgtctcacattgaggattttattgagtttttg
attaattcggagcggtggcaagagggttcggagagattagctggggtgttgaatgatgat
cagttcttttctattaaggggaagacgaagcaccggctttggcttgagttgtgtgatttg
ttgaccaagcatgctactgaggtttctgggttgaatgtggatgcgataattaggggcggg
attaggaagtttacagatgaggtggggaggttgtggacttcattggcggattattatatc
aggaggaagttgccggagaaggctagggatgtgtttgaggagggtatgacgacagtggtg
actgttagggattttagtgtggtttttgatgcatactcgcagtttgaggagagtatgttg
gcatataagatggagagcttggatttgagtgatgaagagggagaggatggtggggatggt
gaagaggaggatgacaaggatatcagaggggatgttgagcactctgtggggaagtttgag
aagaagatcttgaagtgtttttggctgcacgatgataatgatgtagatttgcggctggct
aggttggagcatttgatggatagacggccagaactggccaatagtgttcttcttcgacaa
aacccacataatgtggagcaatggcatcggagagtgaagctctttgagggtaacccaact
aggcagatattgacctacactgaggcagtcaggactgtagaccccatgaaggcagtagga
aagcctcacactttgtgggtagcttttgctaagctttatgagaatcacaaagatcttgct
aatgctagggttatctttgacaaagctgtgcaagtcaattataaggcagtggatcatctt
gctagcatttggtgtgaatgggctgaaatggagttgaggcacaaaaactttaagggagca
ctagacttgatgcggcgtgcaactgcagtgccctctgttgaagttaagcgtagagttgct
gcggagggttacgagcctgtgcagatgaagctacacaaatcgttgaagttatggacattc
tatgtagatttggaggaaagccttgatactttggagagcacccgtgcagtgtatgagagc
atattagatcttagaattgcaactccccaaattattataaactatgcaatgcttctggag
gagcataaatattttgaagatgcatttagggtgtatgaaagaggcgtgaagatcttcaaa
taccctcatgtaaaggagatatgggttacatatttatccaagtttgttaagagatatggg
aagagtaagctggaacgagccagagagctctttgaaaatgctgttgaaacggctcccggg
gaatgtgtaaagcctttatacctgcaatatgctaagttggaggaggactatggtttagca
aagcgtgcaatgaaggtttatgaccaagctactaaagctgttccagctaatgagaagttg
agcatgtacgagatctacatagctcgtgcagcagaaatgtttggtgtgccaaaaaccagg
gagatatatgagcaggcaattcaatctgggcttcctgacaaagatgtgatggccatgtgc
ttgaagtatgctgagcttgagaagagcctcggagagattgaccgttcgcgtacagtttat
atatatgcctcccagtttgcagatccaagatctttttcagatttctggaatcagtggcat
gaatttgaggtccaacatggaaatgaagacaccttcagagaaatgctccgcatcaaacgt
actgttgtttctagttacagccagacacatttcatccttcctgaattaatgatgcaaaaa
gatgagaagataagccttgatacggctgtggatgtactaaaacaagctggggttggtgaa
gatgaaatggctgctcttgaaaggcggttggctcctgcagataacgatgttccagctaag
gataaagccagaactgttgggtttgtgagtgccggggttgaatctcaagctgatactggc
agaagaaatgttaaccaggaggagattgaactgccagaagagagtgatgatgacgaagat
gacgatgttgaaaaggttgagattgctcaaaaggatgtgccaagtgctgtttttggtggc
ttggctaagaagcgggaagaccctgagaaacctgaagatggtgacgaggccaaagaggct
gatagtcgtcttggtgctcttgaaagattgaagcgtagaaagaaagattag
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