Spinacia oleracea (spinach): 110785167
Help
Entry
110785167 CDS
T05137
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03022
Basal transcription factors
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110785167
09124 Replication and repair
03420 Nucleotide excision repair
110785167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110785167
03400 DNA repair and recombination proteins [BR:
soe03400
]
110785167
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110785167
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110785167
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Motif
Other DBs
NCBI-GeneID:
110785167
NCBI-ProteinID:
XP_021845305
UniProt:
A0A9R0JSB9
LinkDB
All DBs
Position
2:105538307..105553503
Genome browser
AA seq
598 aa
AA seq
DB search
MNSGGETVVKRAKYKIAKAPGNSGILKMNAEEFAFSPNDPTSGPRLRVRFNTIGAHRVTK
DGSKTALLNLLKKGEGSEGYIFEFENFSDRNICRDFVTNALERYSEVPKKDAEGPAQLST
EEMERRIKLLQEDSELMKLHKQLVIGGILTEDEFWATRKKLLDGGRKRTSSTQRVGFKSA
MISDIKPLTDGRTNKVTFNLTPEIIHQIFAEKPAVHHAFLNYVPKKMSEKDFWTKYCRAE
YLHSTKNAVAAAAEAAEDEDLAVFLKQDYILAGEARSKIRKVDPTLDMEADQGDDYTHLP
DHGNARDGNKEIAESQTHYDQYKRNLMQDLNRHAAVVLEGRTLDVVTGDTRTVAEALART
KQVELANDTSEKNNNQERLNRVCRMTEIEDLQATREPPVAPLCIKDPRDYFYSQQANALK
TLGDAAFGAGYVKCHVSKQEAYTCLRESISDIKSVGLQTSIIKAEVAFKVLNSLTHNISS
TKYNLGRNNQETVLDRLPSRTRDDLLNHWTSIQELLKHFWSSYPINTDHLSIKVDRLKDA
MAGIYPKLQEIKESVQSDLRHQVSLLVQPMVQALDAAFAHYDANLQKRRAKSGKNGSI
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaattccggtggtgagactgtggttaagcgtgccaagtacaaaattgctaaggctccc
ggaaactctggaattttgaagatgaatgcggaagagtttgcattttctcccaatgatccc
acttctggacccaggcttcgagttcgttttaataccattggagcacacagagtcaccaaa
gacggatcaaaaactgcattacttaatctgctaaagaagggtgaaggatcagaaggatat
atatttgaatttgagaacttcagcgatagaaatatatgtcgggatttcgtgaccaatgca
cttgagaggtactcagaagttcccaaaaaggatgctgaaggacctgctcaactaagtaca
gaagaaatggagcgacggataaagcttttgcaggaagacagtgagctgatgaaactacat
aagcagttggttattggtggaattttgacagaggatgagttctgggcaactagaaagaaa
ttattagatggaggacgtaaaagaacatcttcgacccagcgagtgggatttaaaagtgct
atgatttccgacatcaaacctctaacagatggtcggacaaataaagttacctttaacttg
acaccagaaatcattcatcagatttttgcagagaagccagcagttcatcacgcttttctg
aattatgtgccgaaaaagatgtcagagaaagacttttggactaaatactgcagagcagaa
tatcttcacagcaccaagaatgctgtagcagctgcagcagaggctgctgaagatgaggat
cttgctgtttttctaaagcaggattatatcctagctggtgaagctcgtagtaagataaga
aaggttgacccgacgttagatatggaagcagatcaaggagacgattacacccaccttccg
gatcatggaaacgctcgagatggaaacaaagaaattgctgagtcccagacacattatgat
caatacaagagaaatctgatgcaagatctcaatcgacatgctgctgttgtccttgaggga
aggactctagatgtggtgaccggggacactcggactgtggcagaggcacttgccaggaca
aaacaagtagagttggctaatgatacatccgagaagaacaataaccaggagcgattgaat
agagtttgtagaatgacagaaattgaggatctgcaagcaactcgcgaaccccctgtggca
ccactttgcatcaaggaccctagagattatttctactcacaacaagccaatgcactgaaa
actttgggagacgctgcatttggagctggatatgtaaaatgccatgttagcaagcaggaa
gcttatacttgtctgagagagtccatttctgacatcaagtctgtaggacttcagacatcc
atcattaaagctgaagttgcttttaaggttctgaacagtttgactcataatatatctagt
acgaagtataatctcgggagaaataatcaggaaactgttctggatagattgcccagcagg
acaagggatgatttgttaaatcactggacatctattcaggaattgctaaagcacttctgg
tcatcatatccaattaatacagatcatctgtctataaaggttgatagattgaaagatgca
atggctgggatatatccgaagctacaggaaattaaggagtctgtgcagtccgatctcaga
catcaagtctcacttctggttcagccaatggtccaggctttggacgccgcatttgcacat
tatgatgcaaacttgcaaaagagaagagcaaagagcggaaaaaatggatccatataa
DBGET
integrated database retrieval system
