Spinacia oleracea (spinach): 110785341
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Entry
110785341 CDS
T05137
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110785341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110785341
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110785341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
110785341
NCBI-ProteinID:
XP_021845471
UniProt:
A0A9R0JSH3
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All DBs
Position
6:complement(133754844..133768326)
Genome browser
AA seq
969 aa
AA seq
DB search
MNMDIDPLQSETTDAVKQKSESLIALSNGTISSSISKISGSSRVFPSEKDFHFYYNFDEF
KGPIDEIGAKSQSMLQQINSAKQLWGGKEMEFPQDVDDEAYDWLVNVNDEVIEKFDVSVD
EFSRLRKAEEEGARAKPMIDENGFQLVCGKKKKGLGIGGTREKEETVLSPTVRVVERDKK
TEGPKQKIPFHISTIRRPQEEYNILVNNSNTPFQHVWLEKSEDDSKFIHPLEKLSVQDFV
DCDVESVEPMKPPPLESTPFKMVEEVKDLKELAAKLRSANEIAVDLEHNQYRSFQGLTCL
MQISTRTEDFVVDTLKLRIHIGPYLREIFKDPSKKKVMHGADRDIAWLQRDFGIYVCNLF
DTGQASRVLQMERFSLEHLLQHFCGVTANKQYQNADWRLRPLPREMVRYAREDTHYLLYI
YDLMRIRLLSESPDPENSKALISEVYTRSYDLCMQLYEKELLTETSYLYIYGVQAANLNA
QQLSIAAGLCEWRDAIARAEDESTGYILPNKVLLEIAKQMPLTTSKLRHLVKSKHPYVER
NLGSVVNIIRHSVQNSSSFEAVVQQLKEARIQMAPELNNAGTDISEPSEAQTASDNNIEG
SDGSHYKHAPVHVQLKDEGLKLTGHDPNLSKDRCGVLVKDIRQNGIMTKDTNGSVTLESQ
REQLAFSSQKNVAETTVQLLKKPGRAFGALLGNSASKKKIDLKKDEDKLEQIKSSVNLPF
YSFSSSEQELKQASNQSSEANRISNAQIIGDPSYEPDLGSISEDVILLDGDQQSIQASEE
SNRTTEVTPSDEHPVASGSNTKLNDIILLDSDSSDDEEPADSLGQDQNHDGRNDDQVAYQ
PEVVVLDEDEDEDEDEDNEPISLSDLSSSFQKCLQPVNENQGSSKQEHMSEETGSLQFKP
FDYEAARKEVKFGEAAKKEAKTGDNNNRFGKKKSAASGRSSNDEDLLPQGKRRQAFPASG
NRSSTFKAP
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggacattgatcctttgcagtcggagaccactgacgcagtgaagcagaaatcg
gagtctttaatagccctgtcgaacggtacaatttcttcgtcgatttcgaaaatttcaggc
tcgtctagggtttttccgtcggagaaggacttccacttctactacaatttcgacgagttt
aaaggtccaattgatgaaattggtgcgaagtctcagtcgatgcttcagcaaattaattcg
gcgaagcagttgtggggtgggaaagagatggagtttccccaagatgttgatgatgaagct
tatgattggcttgtgaatgttaatgatgaagtaattgagaagtttgatgtgtctgtggac
gaattttcgaggttgcgaaaagctgaagaagaaggggctagggctaaacctatgattgat
gagaatgggtttcagttggtttgtgggaagaagaaaaagggtcttggtattggtggaacg
agggagaaagaagaaactgtgctatccccgacggtgcgagtagtggagagagataagaag
acggaaggaccgaagcagaagatcccatttcatatatcgacgatcaggaggccacaggag
gagtacaacatattggttaataactcgaatacgccattccagcacgtctggcttgagaag
agtgaggacgactcaaagttcattcacccactggaaaagctatcagttcaggacttcgtg
gattgtgatgttgagagtgttgagccaatgaagccgccaccactggaatctactccattt
aaaatggtagaagaagttaaggatttaaaggagttagctgctaaactacggagtgcaaat
gaaattgctgttgatttggagcacaatcagtaccggtcttttcaagggctaacttgctta
atgcaaatatctaccagaactgaagattttgttgttgacactttgaaattgagaattcat
attggtccatatctgagggaaatcttcaaggatccttcaaagaaaaaggttatgcatgga
gcagacagggatattgcatggcttcagagagactttggcatttacgtatgcaatttattt
gacacaggacaggcttcaagagtgttgcaaatggagagatttagtctggaacatcttctt
cagcatttttgcggagttactgcaaataaacaataccagaatgctgattggaggttgcgt
ccacttcctcgtgagatggttaggtatgccagagaagacacccactacttattatatata
tatgatctaatgagaatcaggctgctttcagaaagtcctgatcctgaaaactctaaagcg
cttatttcagaggtttacacgcgcagttacgacctatgcatgcaactttatgagaaggag
ctgttaacagaaacttcatatctttacatatacggtgtgcaggcagctaatctaaatgct
cagcagctctccattgccgccggtctttgtgagtggagggatgccattgcccgggcagag
gatgaaagcactggttatatattgcctaataaagtactcttggaaatagccaagcagatg
cctttgactactagcaaattacgacatttggttaaatctaagcacccttatgtggagcgc
aatcttggttctgtggtcaacatcatcaggcattcagttcagaattcttcttcttttgaa
gcagtagttcaacaattgaaagaggctcgaattcagatggcacctgaattgaataatgca
ggaactgacatctctgagccctctgaggctcagactgcaagtgacaataacattgaaggt
tctgatggtagccattataaacatgcaccagttcatgtgcagttgaaagatgaaggtttg
aagctcactggccatgatccaaacctaagcaaggatagatgtggggtgttggtaaaagat
attcgccagaacgggattatgacaaaggacactaatggtagtgttactctcgagtctcag
agagaacagctggctttttctagtcagaaaaatgtcgctgaaactactgtccagctgtta
aagaagccgggtcgtgctttcggggcacttcttggaaattctgcctccaaaaagaaaatt
gatcttaaaaaggatgaggacaaattggagcagattaagtcgtctgtcaatcttccgttc
tactcattttcttctagcgaacaagagttgaaacaagccagtaaccaatcttcagaggca
aacagaatatctaatgctcagattattggggacccctcatatgaaccagatttgggcagc
atatcagaagatgtaatattgttggatggtgatcaacagtcgatccaggcatctgaagaa
tcaaatagaactaccgaagttacaccctctgacgagcaccctgttgcatcagggtcaaac
accaagttaaatgatattatattgctggatagtgattccagtgatgatgaagaaccagct
gatagtttaggtcaagatcaaaatcatgatggcagaaatgatgatcaagtagcttatcaa
ccagaggtggtggttctggatgaggatgaggacgaggatgaagatgaggataatgagcca
atttctctttcagatttatcctccagttttcagaaatgtttgcaacccgtaaatgagaac
caaggtagcagcaaacaagaacacatgtctgaagaaacaggtagcttgcagtttaagcca
tttgattatgaagctgctaggaaagaggtgaagtttggggaagctgcaaagaaagaagcg
aaaactggtgataataataatcgctttgggaagaaaaaaagcgctgctagtggtagaagc
agtaacgatgaagacttgcttccccaaggtaaaagacgtcaagctttcccggctagtggg
aatcgcagttcaacatttaaggctccttaa
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