Spinacia oleracea (spinach): 110785367
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Entry
110785367 CDS
T05137
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03015
mRNA surveillance pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110785367
09122 Translation
03013 Nucleocytoplasmic transport
110785367
03015 mRNA surveillance pathway
110785367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110785367
03041 Spliceosome [BR:
soe03041
]
110785367
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110785367
TREX complex
110785367
Spliceosome [BR:
soe03041
]
Complex C
Other components
EJC/TREX
110785367
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110785367
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
110785367
NCBI-ProteinID:
XP_021845492
UniProt:
A0A9R0IAF0
LinkDB
All DBs
Position
3:102740420..102752165
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AA seq
286 aa
AA seq
DB search
MDKALDMSLEDIIKSKKSAGKGRGQGGAPRGRGAKGSVSGGKMRGIGRGAGRRAPLGVNT
RASSFSIAKSFRRTKNFPWQQDLLEESLAAAGIPAMENGTKLNITNLERGVSNDDIRELF
SEIGELKRYAVHFDKNGQPSGSAEVVYAKRSDAFAAHKRYNNVQLDGRPMRIEVASPNSG
GPVSARVNVFGGSNGKASRRVVMTQRGGRTASSAQTNRNVGQRTRGGFKNGQGRAPTQAR
AQTQPRGTGRGQSRGRGRGRGKKLDKSAEDLDKELENYHAEGMQIS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggataaagctttggatatgtctttagaagatatcattaagagcaagaaaagtgcaggc
aaaggtagaggacaaggtggtgctcctagagggcgtggagctaaaggatctgttagtggt
ggaaaaatgagaggaataggtagaggggcagggcgtcgggcacctcttggagtaaatact
cgagcttcatctttctctatagccaagtcttttcgcagaaccaagaacttcccatggcaa
caagatttgttagaagaaagccttgcagctgcaggaatacccgcaatggaaaacggtaca
aagttgaacattacaaacttggaacgtggagttagcaatgatgatataagggagcttttt
tctgagatcggggagctgaaacgttatgctgttcactttgacaaaaatggtcaacccagt
ggatcggcagaagtcgtctatgcaaaaagaagtgatgcatttgctgcccacaagcgatac
aataatgttcaacttgatggaaggccaatgaggattgaagttgcaagccctaactcggga
gggccagtgtctgctcgtgtaaatgtctttggaggctctaatggaaaggcatcaaggaga
gttgtaatgacgcaaaggggtggtcgtacagcttcatcagctcagacaaatcgtaatgtt
ggacaaagaacaagaggtggcttcaagaatggccaaggacgtgcaccaacacaagcccgt
gcacaaacacaaccacgaggcactggccgtggccaatctcggggaagaggaaggggtcgt
gggaaaaaactagacaaatctgctgaggaccttgacaaagagctagagaactatcatgct
gaagggatgcagatttcctag
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