Spinacia oleracea (spinach): 110785817
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Entry
110785817 CDS
T05137
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110785817
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110785817
Spliceosome [BR:
soe03041
]
Complex C
Other components
Complex C specific factors
110785817
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
T2SSE
Cas3-like_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
110785817
NCBI-ProteinID:
XP_021846022
UniProt:
A0A9R0IB99
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All DBs
Position
6:complement(22559230..22606089)
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AA seq
701 aa
AA seq
DB search
MAKFWKPGTEKPRLVEDEDGGVLFFYSTSSSSSSSFGYANNLQQQRQRLPVFKRRDAILF
LVENHATTIVVGETGSGKTTQIPQYLNEGGWAESGHVIGCTQPRRLAVQSVASRVAEEMG
VKLGEEVGYVIRFEDVTTPGVTRIKFLTDGVLLREMMDDPLLSKYSVIMIDEAHERSIST
DIVLGLLKKIQRRRPELRLIISSATIEAKSIASFFRASKKHRGGATKELGPKTEPAIVSV
EGRGFTVEINYIQEPVADYLRAAVSTVMLIHKQQTVGDILVFLTGQDDIDAGVQLLNEEA
QSSGKSNGELLVLPLYSGLSRAEQDLVFSPTPRGKRKIIISTNIAETSLTLEGIVYVVDS
GFSKQRFYDPLSDIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYYVNEMSAEGI
PEMQRSNLVSCIIQLKALGIDNILGFGWPSSPSPEAMIRALEVLYSLGVLDDDAKLTSPT
GFQVAEIPLDPMLSKALLASNELGCSEEMLTISAVLSVQSIWISVRGAQKQLDEAKLRFA
AAEGDHVTFLNVYKGFLESGKSSKWCHKNFINYHAMKKVLETREQLKKTAQRLGIVLKSC
DRDIQVIRKAITAGFFANACHLEPYSHEGKYKTVRTSQDVYIHPSSVLFRVNPKWVVYHS
LVSTDRRYMRNVVTIDPTWLVEVAPHYYQYQGPGSIATLTR
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagttctggaaaccgggaacggagaaacctcgactagtagaagacgaagatggc
ggcgtactctttttctactctacttcttcctcttcatcttctagttttggatacgccaat
aacctccagcagcagcgccagcggcttcccgtgttcaagcgcagggacgccattctcttc
ctagtcgaaaaccatgccaccaccatcgtcgtcggagaaactggcagcggaaaaaccact
caaattcctcagtatttgaatgaaggaggatgggctgagagtggtcatgttattggttgc
actcaaccccggcgtcttgctgttcagtcagttgcttcaagggttgctgaagaaatgggt
gttaaacttggtgaggaggtcggatatgtaatcagattcgaagatgtaacaaccccgggt
gttacaagaatcaaattccttaccgatggagtgttgctaagggaaatgatggatgatcct
cttctgtccaagtacagtgtgatcatgatagatgaagcacatgaaaggtcaatttcaact
gatattgtactgggtttgttgaagaagattcaaaggcgtaggcctgaactgcgtttaatt
atctcatctgcaactattgaagcaaaatccatagcgtctttcttcagagccagtaagaag
catcgaggaggagctaccaaagaacttgggccaaagacagaacctgccattgtttcagtt
gagggaagaggctttactgtggaaatcaattatatccaggagccggttgcagactatctt
cgagctgctgtctcaactgttatgttgatacacaaacagcaaacagtgggtgatattctt
gtatttcttacgggtcaagatgatattgacgctggtgttcagctgcttaatgaagaagct
cagagttctggtaaaagcaatggagaattgcttgttctacctttgtactccggactttcg
cgtgcagagcaggacttggtcttttctcctacacctagagggaaaaggaagattattata
tcaacaaatattgcagagacatcattgaccttggagggcattgtatacgttgttgatagt
ggcttctcaaaacaacgtttttatgatccgttatcagacattgagaatttggtggtggcg
cccatatcaaaggcttctgcaagacaaagagcaggaagggctggaagagtgagacctggg
aaatgtttcaggttatacacagaggaatattatgttaacgaaatgtcagctgaggggatt
cctgagatgcagaggtcaaaccttgtctcctgcattatacagttaaaggctctagggatt
gataatatcttgggatttggctggccctcgtcaccatcaccagaagctatgattagagct
cttgaagtgttgtactccctaggtgtgcttgatgatgacgccaagctcacatcacctact
ggatttcaagttgctgagatcccactggatcctatgctctcaaaagctctgcttgcttct
aatgaactagggtgttcagaggaaatgcttactatatcagctgttctttctgtacagtca
atctggatctctgtaaggggagcacagaagcagctagatgaagccaagctccgatttgct
gctgctgagggtgatcatgtaactttcctaaatgtgtacaaaggatttctggagtctggt
aaatcatcaaaatggtgtcacaagaactttataaattatcacgctatgaaaaaggttctc
gagaccagagaacaactcaaaaaaacggcacagcggctgggcatagtcttaaaatcttgt
gacagagatatacaggttataagaaaggcaataactgctggattttttgccaatgcttgt
catttggaaccatacagccatgaaggaaaatacaagactgttcgaacttctcaggatgtt
tatatccacccttcatctgttttattcagagtcaatccaaagtgggttgtataccattct
ctcgtctcgactgatcgtcgatacatgcgcaatgtcgtgacaatagatccaacatggctt
gtggaggttgctccccattattatcagtaccaagggcctggttctattgcaactttgacc
aggtaa
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