Spinacia oleracea (spinach): 110785856
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Entry
110785856 CDS
T05137
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03082
ATP-dependent chromatin remodeling
soe03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110785856
03083 Polycomb repressive complex
110785856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soe03036
]
110785856
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
110785856
Histone modification proteins
HAT complexes
HATB complex
110785856
HDAC complexes
Sin3A-HDAC complex
110785856
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
110785856
PRC2.2
110785856
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
110785856
Heterochromatin formation proteins
Other heterochromatin formation proteins
110785856
Chromatin remodeling factors
NuRD complex
110785856
NuRF complex
110785856
NuRF complex (fruit fly)
110785856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
eIF2A
Beta-prop_SPT8
Beta-prop_HPS5
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
110785856
NCBI-ProteinID:
XP_021846063
UniProt:
A0A9R0IBL6
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All DBs
Position
6:complement(132491964..132506145)
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AA seq
472 aa
AA seq
DB search
MTEKGKGGKGGKAGELTVDEKYTQWKSLVPILYDWLANHNLVWPALSCRWGPLIEEATYK
HRQRLYLSEQTDGSVPNTLVIANVEVVKPRVAAAEHISQFNEEARSPFVKKFKTLIHPGE
VNRIRELPQNSNIVATHTDSPDVLIWDVENQPTRHAVLGAHSSRPDLILTGHQENAEFAL
AMCSCEPLVLSGGKDKLVVLWSINDHISTLATEPGAAKSTSSGSNIKSASKSGDGNNGNT
ASPSVEARGIYKGHDDTVEDVQFCPTSAQQFCSVGDDSCLILWDSRTGLTPVTKVEKAHD
TDLHCVDWNPHDENFILTGSADNSVHMFDRRNLTKDGVGSPVHKFQGHSDPVLCVQWSPH
NRSVFGSAAEDGLLNIWDYEKVGEMQPESGNKMSDCPAGLFFKHAGHRDKVVDFHWNSID
PWTIVSVSDDCSSSAGGGTLQMWRIIDLLYRPEDDVLAELEKFRSHVTTCSS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaaaggtaaaggaggaaagggtgggaaggcaggcgagttaacggtggacgag
aagtacactcagtggaaatctctggtacccattctttacgattggcttgctaaccacaat
cttgtttggcctgctctttcttgtcgatggggtccacttattgaggaagccacttacaag
catcggcagcgtctttatctctctgaacagactgatgggagtgttccaaatacacttgtt
attgcaaatgttgaagttgttaagcctagggttgctgctgcagagcatatatctcagttt
aatgaagaggctcgctctccatttgttaagaagttcaaaaccctcatacatccaggggag
gtgaacaggatcagagaactcccgcagaacagtaacatagtggcaacacacactgatagc
cctgacgttttaatttgggatgtggaaaatcaacctactcgtcatgcagttctaggagct
catagctctcgtccagatctgatattgactggacaccaggaaaatgctgaatttgctctt
gcaatgtgctcttgtgaaccgctggtgctttctggagggaaggataaattagtggttttg
tggagtataaatgatcatatctcaacattggctacagaaccaggggccgcaaagtccact
tcttctggcagcaatatcaaatcggcatctaagtctggtgatggaaataatggaaataca
gctagtccttcagttgaagcacgtggcatctacaagggacatgacgatactgttgaggat
gtacaattttgccccacgagtgcgcagcagttttgcagcgtgggtgatgattcctgccta
atactgtgggattcaagaactggattgactccagtcactaaggttgaaaaggcccatgat
actgatctgcattgtgttgattggaaccctcatgatgaaaacttcattttgactggatca
gctgataattcagttcacatgtttgatcggagaaatctcactaaggatggagttggatca
cctgtccataaatttcagggccacagcgatcctgtcctttgtgtacagtggtccccgcat
aatagatcagtttttggcagcgctgctgaggatggcctgctgaacatatgggattatgaa
aaggttggtgaaatgcaaccagagagtggaaacaaaatgtcggattgtccagcaggttta
tttttcaagcatgcaggacacagggacaaagtggtcgacttccactggaattcaattgat
ccgtggactattgtcagtgtttcagacgattgctcaagctctgctggaggaggaacgttg
cagatgtggcgcattattgatttgctttaccgaccagaagatgatgtcctggcggagttg
gagaagttccgatctcatgtaaccacatgctcctcttag
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