Spinacia oleracea (spinach): 110786202
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Entry
110786202 CDS
T05137
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110786202
03036 Chromosome and associated proteins [BR:
soe03036
]
110786202
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
110786202
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110786202
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
110786202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
UvrD_C
PhoH
SLFN-g3_helicase
SNF2-rel_dom
PIF1
Mov-10_helical
AAA_7
DEAD
Helicase_RecD
ATPase_2
AAA_5
AAA
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
110786202
NCBI-ProteinID:
XP_021846434
UniProt:
A0A9R0JTY6
LinkDB
All DBs
Position
4:23616215..23623148
Genome browser
AA seq
996 aa
AA seq
DB search
MSVCGDKSDDEYSVIGDKGEMGFIDYQNQSSVCSYDPYEDGPVVISVPFPSVEHKPQSIF
VDEVAADSITIKNTTSDSVELWRIQIYASNPEDSFKLSLMEPSKPGFVGFSSLEDRILQP
LKTLTVWLSCKPTDIGMYTCIVHFDVGDDRIERVVFLLAEDSISKALASKKPYQRGRKKA
NFVMDSYVQGVRPARPSCRGFRPRLPSYEIPKEIREVIENKQVPDAILEGLSRKNYVPFF
RTLLVMEELRLEQDIQAYNMENVSMRSKGRQFLTLEVLGLAERRPSLVHGDSVYARLASG
EVDDNPVYEGCIHRVEADQVYLKFADEFHHRHNDRNFYNIRFMYNRVSMRRLYHAIEGAE
KVHKAFLFPSESLVKRQITPAPMVPISSKLNEEQLNAVEMVLGCRGGVPYMINGPPGTGK
TMTLVEVILQLYKTRKNSRILICASSNCAADHILDKILKERNIKIRENEIFRLNASSRPV
EDMNPDYMQFCYFEHSIFRCPPLEALLHYRVIITTYMSSVNLHAEGVRQGHFSHIILDEA
GQASEPETLVSISSLCQNNTVVVLAGDPMQLGPVIFSQDAKKHGLGKSYLERLFECDLYS
EGDEGYVTTLRRNYRSHSEILCLPSELFYNGELMACYKPMNSTSWEDLLPNKEFPILFTG
IQAYDEREGDNPSWFNRTEASMVVKFIKKLIERDVSESEIGVITPYRQQVAKIKTALENG
DINDIKIGSVEQFQGQEREVIIISTVRSTVKHDEFDRVHYLGFLSNPKRFNVAITRARSL
LVIIGNPHIICKDPFWAKLLWRCVDNNAYEGCSLPERQGFSEETPLEGEGSHAADQDNRN
NYSYEDCSIPHGESNNDNFSAVDGWCLDAPVVQQNGAELSWENDTSKPVKGEEEWSDGWT
LDAPVVQQNGAEWSLDAPAPQQNGAEWTLDAPVVQQNGAEPSSEVDTLKPVKGEGECSDG
WSLEAPSVQEDGPELSWENDIPIPVKDEDEWSDGWK
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtctgtggtgacaaatcggatgatgagtattctgtcattggagacaaaggggag
atgggatttattgattatcagaatcagagctctgtttgtagctatgatccatatgaggat
ggcccagttgttatttctgtgccttttccatctgttgaacataagcctcaatcaattttt
gtcgatgaggttgcagctgattcaataaccattaaaaacacaaccagcgattctgtagaa
ctttggaggatccaaatatatgcttcaaaccctgaagattctttcaaactttcgttgatg
gagccttccaaaccagggtttgtgggcttttcttctttggaagaccggatacttcaacca
cttaaaacgttgacagtttggttatcttgcaagcctacagatattgggatgtacacatgc
attgtccactttgacgttggggatgataggatagagcgtgtggtctttctcttggcagaa
gatagtatctctaaagctttagcttcgaagaagccgtatcaaaggggaaggaaaaaggca
aattttgttatggattcctatgttcaaggcgtacgcccagcaaggccaagctgccgcggt
ttccgtcctaggcttcctagttatgagataccaaaagaaatcagagaagttatagagaat
aagcaggttccagatgctatcttagaagggctatcaaggaagaactatgtacctttcttc
agaacactacttgttatggaagaactgcgcttggagcaagatatacaggcttataacatg
gagaatgtctctatgaggagcaagggccgtcagttcttaacactggaggtcctaggcttg
gctgaaagaagaccttcactagtgcatggagattccgtctacgccagacttgcttccgga
gaggttgatgacaatcctgtttatgagggttgtatacaccgcgtagaggctgatcaagta
tatctgaaatttgctgatgaattccaccatcgtcacaacgatcgtaatttttataacatc
agatttatgtacaatcgtgtcagtatgagaagactatatcatgctattgaaggtgcagaa
aaagtacataaagccttcctctttccatctgagtctttagtgaagaggcagattacacca
gccccaatggtgccaatatctagtaagctcaatgaggagcaactgaatgctgttgaaatg
gttctaggatgtcgagggggagtcccatatatgataaatgggccaccaggtactggtaaa
acaatgacactggtagaagtgatcctccaactttacaaaacccgcaaaaattctcggatt
ttaatctgtgcctcttccaactgtgccgcagaccatatactggacaaaattctgaaagag
aggaacattaaaatccgggaaaatgaaattttcaggctcaatgcgagcagtcgcccagtt
gaagatatgaaccctgattatatgcaattttgttattttgagcactctattttccggtgt
cctccgctcgaggcactgttgcattatagagtcattataacaacatatatgagttctgtc
aatcttcatgcagaaggggttaggcagggccacttctctcacataattcttgatgaggca
ggccaggcctcagaaccagaaacccttgtttccatttctagcctctgccagaataatact
gtggttgttcttgctggagatccaatgcaactaggccctgtcatattttcccaagatgca
aagaaacacggattaggaaaatcatatttggaaaggctgtttgaatgtgatctctatagt
gaaggggatgaaggttatgtgacaacacttcggcggaactaccgatcccactctgaaatc
ctgtgtctgccttcagaattattttacaatggagaattgatggcatgctacaaacccatg
aactccacatcttgggaagatctccttcctaataaggaatttcccattctttttactggt
atccaagcgtatgatgagagggaaggagataacccctcatggttcaatcgcactgaggct
agcatggtagttaagtttatcaagaagctcatagaaagggatgttagtgaaagcgaaatc
ggtgtgattacaccttacaggcagcaagtagccaaaattaaaaccgctcttgaaaatggc
gatatcaatgatatcaagattggtagtgttgagcagtttcaaggacaagagagggaagtg
attattatatccactgtccgatcaactgttaaacatgatgaatttgacagagtccattat
ttaggatttcttagcaatccaaagaggtttaatgttgccatcacccgagccagatctttg
cttgtcattatcgggaacccacatattatctgtaaggatcctttctgggcaaagcttctg
tggcgttgcgtagacaacaatgcatatgagggttgttctcttcccgaaagacaggggttc
agtgaggagactccgttagagggcgaagggtctcatgctgcagaccaagataatcgcaac
aactactcttacgaggattgttctattcctcacggtgaaagcaataatgataacttttcg
gcagtggatggatggtgtcttgatgcacctgtagtgcaacagaatggtgcagaactatct
tgggaaaatgatacttctaaacctgtcaaaggtgaggaggaatggtctgatggatggact
cttgatgcacctgtggtgcaacagaatggtgcagaatggtctcttgatgcacctgcgccg
caacagaatggtgcagaatggactcttgatgcacctgtggtgcaacagaatggtgcagag
ccatcttcggaagttgatactcttaaacctgtcaagggtgaaggcgaatgctcagacgga
tggtctcttgaagccccttcggtgcaagaggatggtccagagctatcctgggaaaatgat
attcctatacctgttaaggatgaagatgaatggtctgacggctggaagtga
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