Spinacia oleracea (spinach): 110787914
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Entry
110787914 CDS
T05137
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin ligase complex SCF subunit sconB
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110787914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110787914
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110787914
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
WD40_like
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_RFWD3
WD_LRWD1
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
110787914
NCBI-ProteinID:
XP_056688364
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Position
6:complement(79385047..79388737)
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AA seq
316 aa
AA seq
DB search
MKPKFGDNVSGRVRTTIKSVPQNVKKFCIKSSYGKPALIGGLFTSSCAHDMQCISFVFVF
VFFVFVLAGAGAGIWRAWCLTVHSISHDCGAIALNYETGLSFLKGSTNGLFIACFVSLAL
LVGLPRYGVYVAFSPVSDNVATASADRTAKLWNTDGTLLRTFEGHLDRLARIXPSIHLRS
ILALEGHIKPVYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEP
QEGYYLVTASYDTTVKVWSSRDFKLIRTLSGHEARVTPLDVIGGLHSEECAYTSEEIDVV
REQPAKCFTRKYLLLA
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaaagtttggggataatgtatccggacgtgttcgtacaacaatcaagtcagta
cctcagaatgtaaaaaagttctgtataaagtcctcatatgggaaaccagctctgattggt
ggtttgtttacttcttcatgtgcacacgatatgcagtgtatttcctttgtttttgtcttt
gtcttttttgtttttgttctggccggggccggggcggggatatggagagcatggtgctta
actgtgcattcaattagccatgattgcggggccattgccctaaattatgagactggtttg
tcatttttgaaggggagtactaatggtctgtttattgcttgttttgtttctttagctctg
ttagtggggttgccaagatatggagtatatgttgcattttctcctgtaagtgacaatgta
gcaactgcctcagctgatcgtactgcaaagttgtggaacacagatggcactttattgaga
acatttgaaggtcatttagaccgcctagctcgtattnngccttccatccatctgagaagt
attcttgctttggaaggccacatcaaacctgtttatggagttgatttctctcctaatggc
tatcatttggccactggttctgaggataacacttgtcggatttgggacttgagaaagaaa
aagtcattgtacataattcctgcccattcaaagcttatttcacaggtcaaatttgagcct
caggagggatattatttggtcactgcttcatatgatacaactgttaaggtatggtcatct
cgagacttcaagcttatcaggacattgtcaggacatgaagcaagagttacacccttagat
gtcataggaggtctacactccgaggaatgcgcctatactagtgaggaaattgatgtggtt
cgtgagcaaccggctaagtgttttacccgcaagtatttactattggcttga
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