Spinacia oleracea (spinach): 110788022
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Entry
110788022 CDS
T05137
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03030
DNA replication
soe03410
Base excision repair
soe03420
Nucleotide excision repair
soe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110788022
03410 Base excision repair
110788022
03420 Nucleotide excision repair
110788022
03430 Mismatch repair
110788022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soe03032
]
110788022
03400 DNA repair and recombination proteins [BR:
soe03400
]
110788022
DNA replication proteins [BR:
soe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110788022
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110788022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
Rad17
RCF1-5-like_lid
PTCB-BRCT
AAA_30
AAA_22
AAA_19
nSTAND3
AAA_5
AAA_18
AAA_assoc_2
BRCT_2
RuvB_N
AAA_14
Sigma54_activ_2
AAA_16
Zeta_toxin
RNA_helicase
Gp44_lid
AAA_28
AAA_17
AAA_33
NTPase_1
Motif
Other DBs
NCBI-GeneID:
110788022
NCBI-ProteinID:
XP_021848352
UniProt:
A0A9R0IFL2
LinkDB
All DBs
Position
4:179787905..179802291
Genome browser
AA seq
974 aa
AA seq
DB search
MSDIRKWFMKHHDKGNANAAKSAAAKPASDKPSATASETEGQESAARRKTSKYFDKDQEK
PKVETQKVEVPAKRKTQKGDGDSHVNTKPSPSPAKKVQKVEEEDDDDDFAPISSKKRSVD
ASPSKRLKGSSGRGIAKKNVVIDESDDEMDEEKETKTPVKSAGRGRGRGAESAAAATGRG
RGRGRGGFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHG
GRVTGSVSKKTNFLLCDEDIGGRKSEKAKELGTPFLTEDGLFDMIRASKKSKSPAQCNSK
KPSESTPSSSAKKIQQNVDVKKAGVSSFSANIKAPKSSASPSPAKKKDLSKQGPSLTWTE
KYKPKVPNDIVGNQKLVKDLHDWLSHWDEQFSHGNGKRKRQSNSAEKKAVLLSGTPGIGK
TTSAKLVSKMLGYEIIEVNASDSRGKANSQISKGIGGSTANSIKELISNKSLGDMDRSKH
PKTVLIMDEVDGMSAGDRGGVADLIASIKISKVPIICICNDRYSQKLKSLVNYCALYNFR
KPTKQQMAKRLLQIANAEGLKVNEIALEELAERCNGDIRMALNQLHYMSLSMSVIRYDDI
RQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDLDLVPLLIQENYINYRPS
SVVKDDSGMKRMSSLARVAESIADGDIINVQIRRYRQWQLSQSSCVSSCIVPAALMHGQR
ETFMPGERNFNRFGGWLGKNSTMGKNLRILEDLHVHMLASSDSYLGRGTLRLDFLTLLSK
KLTEPLRVLPKEEAVKNVVEFMDAYSLSMEDYDTLMELSKFQGRTTPSDGILPAVKGALT
KAYKEGSSSRVVRTADMITLPGLKKAPKKRIAAILEPVDEIGEVNGDINEEDEEENAEDA
EDLDDANGAKRLKLDLESNHAKGIQVQVDLKGAGSSGTKKTQKASAGRGKGGAAEPASGK
KGGRGSGTAARKKK
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatatcagaaaatggttcatgaagcaccatgacaagggaaatgccaatgctgcc
aagtcagctgctgcaaaaccggcatctgataaaccttctgccactgcttcagaaacagaa
ggtcaagaaagtgctgccagaaggaaaacaagcaaatattttgataaagatcaagagaag
ccgaaagttgagactcaaaaggtggaggtgcctgccaaaagaaagacacaaaagggagat
ggggattcccatgttaacaccaaaccttcaccttcacctgcaaagaaggttcaaaaagta
gaggaggaagatgatgatgacgactttgctcccattagttccaaaaaaaggtcagttgat
gctagtcctagcaaaagactaaaaggaagttcaggaaggggaattgcaaagaaaaatgtg
gtcattgatgaaagtgatgatgaaatggatgaggaaaaggagactaaaactcctgtcaaa
tctgctgggaggggtcgtggtaggggagctgaatctgccgctgctgctaccggaagagga
aggggacgtggacggggtggatttatgaactttggtgagagaaaagatccgcctcacaaa
ggagaaaaggaagttcctgaaggcacccccgattgtttagctgggttaacttttgtaata
tccggaacacttgacagtttggaaagggaagaagcagaagatttgatcaagagacatgga
ggtcgtgttaccggatctgtcagcaaaaagacgaattttcttttatgcgatgaagatatt
ggaggacgtaaatctgaaaaagcgaaagaattgggaacaccctttctcacagaggatggt
ttgtttgatatgatccgtgcatccaaaaaatctaaatcacctgctcaatgcaactcaaaa
aaaccatctgaaagcaccccgtcatcatctgcaaagaaaattcagcagaacgtggatgtg
aaaaaagctggtgtgagtagcttttcagccaacattaaagctcctaagtcttcagcaagt
ccatcacctgctaagaagaaggatctttcaaagcaaggtccttccttgacatggacagag
aaatacaagcccaaagtcccaaatgatatagttggcaaccaaaagcttgttaaagatctt
catgattggttatcacactgggatgagcaattttcacatggtaatggaaagaggaaaagg
caaagcaattctgctgagaaaaaggctgtcttattgagtggaactcctggcatagggaaa
actacctcagcaaagttagtcagtaaaatgctgggttatgagataattgaggtaaatgcc
agtgatagtcgtggaaaggctaattcccaaattagtaagggaattggtggaagtactgca
aattctataaaggagcttattagtaataagtccctgggtgatatggataggtcaaagcac
cccaagactgttctgattatggatgaggttgatggcatgtctgcgggtgatagaggtggg
gttgcagacctaattgcaagcatcaagatctccaaagtcccaattatatgcatttgcaat
gaccgctacagtcagaaattgaaaagtcttgtaaattattgtgcgctgtataatttccgg
aagcccacaaaacagcagatggcaaagaggttgttgcaaattgctaatgctgaagggctt
aaagtgaacgagattgctttggaagagttggcagagagatgtaatggagatatacgcatg
gctttgaaccagctgcattatatgagcctgtcaatgtcagttatcagatatgatgatatt
agacaacgtcttcttagcagcgctaaagatgaagacatttcaccatttactgctgttgat
aagttgtttggttttaacggtgggaagttgaggatggatgaacggattgacctgagcatg
agtgaccttgatctcgttcctcttcttatccaggaaaattatattaattatcggccgagt
tctgtggtgaaagatgatagtgggatgaaaagaatgagctcgcttgcccgtgttgctgaa
tcaattgctgacggagatattattaatgtacaaattaggagatacaggcagtggcagctc
tctcaaagtagttgtgtttcttcctgcatagtaccggccgcattgatgcatgggcagagg
gagacgtttatgccgggtgaaagaaatttcaataggtttggtggttggcttgggaagaat
tcaacaatgggaaagaatttgaggatcttggaggatctccatgtccatatgcttgcatct
agtgattcatatttgggaaggggaactttacgtcttgatttccttacgcttctttctaaa
aaattaactgaaccactccgggttcttcctaaggaggaggctgttaaaaatgtagttgaa
tttatggatgcttactcattaagtatggaggactatgacacgcttatggagttgtctaaa
tttcagggacgcacaactccatctgatggtatattaccagcagtaaaaggtgctctaaca
aaggcatataaagaaggtagcagttcacgtgtagtacgaacagcagacatgatcaccctt
cctggtttaaaaaaggctccaaaaaagaggattgcagctattctggagcctgttgatgaa
attggtgaggtaaatggtgatatcaatgaggaggatgaggaagagaacgctgaagatgct
gaggatttagacgatgccaatggtgcaaaaagactgaagctggatctcgagagtaaccat
gctaaagggattcaagtccaagtggacttgaaaggtgctggaagttctggcactaaaaag
acacaaaaggcctcggcaggaagaggcaagggaggtgctgctgaaccagcatcgggaaag
aaaggtggtcgtggatcaggaactgctgccaggaaaaagaagtag
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