Spinacia oleracea (spinach): 110788605
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Entry
110788605 CDS
T05137
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110788605
09123 Folding, sorting and degradation
03018 RNA degradation
110788605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110788605
03041 Spliceosome [BR:
soe03041
]
110788605
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110788605
mRNA degradation factors
5'-3' decay
Lsm complex
110788605
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110788605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
110788605
NCBI-ProteinID:
XP_021848917
UniProt:
A0A9R0IGS3
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All DBs
Position
6:124036966..124043840
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AA seq
145 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
KGVGGRGRGGPGGKPGGKAVGGRGR
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttatcactgttgaagactgctcagggccaccccatgttggtggaattgaag
aatggggaaacttacaatgggcatttggttaactgtgatacatggatgaacattcatctt
cgtgaagtcatctgtacctctaaggatggagataggttttggagaatgcctgagtgttat
atccggggaaatactatcaagtatctaagagtgccagatgaggtcattgataaggtccag
gaggagaagagccgcacagacaggaagcctcctggtgtagggcgtgggagaggaagaggt
agagaagatggtcctgggcggcagataaaaggcgttggacgcggtatggatgatggaggt
aaaggtgttggaggcagaggtaggggtggtcctggtgggaagcctggtgggaaagcagtt
ggaggccgaggtcgatga
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