KEGG   Spinacia oleracea (spinach): 110788605
Entry
110788605         CDS       T05137                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03018  RNA degradation
soe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110788605
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110788605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110788605
   03041 Spliceosome [BR:soe03041]
    110788605
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110788605
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110788605
Spliceosome [BR:soe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110788605
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 110788605
NCBI-ProteinID: XP_021848917
UniProt: A0A9R0IGS3
LinkDB
Position
6:124036966..124043840
AA seq 145 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKSRTDRKPPGVGRGRGRGREDGPGRQIKGVGRGMDDGG
KGVGGRGRGGPGGKPGGKAVGGRGR
NT seq 438 nt   +upstreamnt  +downstreamnt
atgcttcctttatcactgttgaagactgctcagggccaccccatgttggtggaattgaag
aatggggaaacttacaatgggcatttggttaactgtgatacatggatgaacattcatctt
cgtgaagtcatctgtacctctaaggatggagataggttttggagaatgcctgagtgttat
atccggggaaatactatcaagtatctaagagtgccagatgaggtcattgataaggtccag
gaggagaagagccgcacagacaggaagcctcctggtgtagggcgtgggagaggaagaggt
agagaagatggtcctgggcggcagataaaaggcgttggacgcggtatggatgatggaggt
aaaggtgttggaggcagaggtaggggtggtcctggtgggaagcctggtgggaaagcagtt
ggaggccgaggtcgatga

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