Spinacia oleracea (spinach): 110788839
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Entry
110788839 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03015
mRNA surveillance pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110788839
09122 Translation
03013 Nucleocytoplasmic transport
110788839
03015 mRNA surveillance pathway
110788839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110788839
03041 Spliceosome [BR:
soe03041
]
110788839
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110788839
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110788839
Spliceosome [BR:
soe03041
]
Complex C
Other components
EJC/TREX
110788839
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110788839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
110788839
NCBI-ProteinID:
XP_021849167
UniProt:
A0A9R0IHF1
LinkDB
All DBs
Position
6:122448020..122452765
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRENDAYEEELLDYDEEEEKVPDPAVTKTNGEAAKKGYSGIYSSGFRDFLLKPELLR
SIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGVKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKAIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHFIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLARYKGFKDGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagagaaaacgatgcttacgaagaggagcttctcgattacgacgaggag
gaagagaaagttccagatcccgctgtcaccaaaaccaacggcgaagccgctaaaaagggt
tacagtggcatctacagttcgggattcagagacttccttttgaagccagagttattgcgt
tcaattgtcgactgtgggtttgagcatccatcagaagtgcaacacgagtgtattcctcaa
gcaattttgggaatggatgtcatatgccaagccaaatctggtatggggaagaccgctgtt
tttgttctttcaactttacaacagattgatcctgtggctgggcaagttgctgcacttgtt
ctctgtcacaccagggaattggcttatcagatttgtcatgagttcgagaggttcagcaca
tatctgcctggtgtgaaggtggctgtcttctatggaggtgttaatatcaaaatccacaag
gacctgcttaaaaatgaatgccctcacattgttgtcggtactcctggaaggatacttgca
ttgtcaagagacaaagatctgtcattaaagaatgttcgacattttattcttgatgaatgt
gacaagatgctcgaatcccttgacatgaggagagatgtgcaagagatcttcaaaatgact
ccccatgacaagcaagtgatgatgttctctgcaactctaagcaaggccatccgtccggtt
tgcaagaaatttatgcaagatccgatggaaatatatgtggatgatgaagccaagttgacc
cttcacggtcttgtacagcacttcatcaaattgtctgagttggagaagaatcgcaagttg
aatgatttgttggacgctctggatttcaatcaagttgtcatcttcgtcaagagtgtcagt
agagctgctgagttgaacaagcttcttgtggagtgcaacttcccttcaatttgcatccat
tctggcatgtcccaggaagaaagattggctcgatacaagggtttcaaagatggaaagcaa
agaatccttgtcgctactgatttagttggtagaggaattgacattgaaagagttaacatt
gttatcaattatgacatgccagattcagctgacacttacctacatagggttggcagagct
ggaaggtttgggacaaaggggctggccattacgtttgtctcttctgcctccgactctgat
gttcttaatcaggttcaagagaggttcgaggttgatatcaaggagcttcctgagcagatc
gatacctccacatacatgccatcatag
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