Spinacia oleracea (spinach): 110789644
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Entry
110789644 CDS
T05137
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110789644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110789644
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110789644
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
DUF7059
Motif
Other DBs
NCBI-GeneID:
110789644
NCBI-ProteinID:
XP_021850033
UniProt:
A0A9R0IIQ1
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Position
1:complement(96981701..96988563)
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AA seq
849 aa
AA seq
DB search
MEKATEKEKSSRKSREERETTEHKHRHHRSRHRHRYEDEEDDDEHRRSRREKSHDDEHHH
RHHHKSREYSVDEQGDEEEDARDSRRGREGSRDKDKDRKKRKDREVSEERIDDKRAKVSD
VKKERRRFDDDDNGRIVKDERKEKRRFEDDGNGRVKIEEAKTKKEDGGRGDGSGEIVDNN
NGRKRDRRRFEDGDVKKESVAEPTGRSGSFPNDGAEKSLNVSSRFSSETFPANNHTATKV
SSISTTHENKGVNITGSHAVTGKSSTDGTPSTAGKTGNISLDALAKAKKALQMQKELAAK
MKKIPLLNRGTSSSNAVNAQVGSKEEIKPPSAAGIQQTPSTSTFPPAAASAKTASMIDPA
KYEAVKRAQELAAKMGFRQDTEFAPLINLFPGQLPLDTTALQKPAKAPVLRLDAHGREVD
EDGNVVYISKPSSLSTLKVNINKQKKDAFQIHKPELEVDPDKNPHFDPRMGIDKTKLLRP
KRMNFLFVEEGKWSKDAEIIKLKSQFGEAQAKELKAKQAQLARAKAEPNINPNLIEVSER
VITKKEPKESIPEVEWWDVPLLRSGDYADIADGSSIEDRVKMEKITIYLEHPRPIEPPAE
PAPPQPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKPKVKMSNIMRVLASEA
TQDPTKMEMEVRTAAAEREQAHVDRNIARKLTPAERREKKERKLFEDPNTLETIVSVYKI
NDFSHPQNRFKVDINAQENRLTGCAVISEGFSVVVVEGGSKSIKRYGKLMLRRINWLAKV
LNEDGEEDEDEEKPPNKCSLVWQGSVAKPSFNRFFIHDCRTEAAARKVFSDAGVGHYWEL
AANFVDDQI
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggcgacggagaaggagaaaagcagtcggaaatcgagggaggagagagaaact
acagagcacaagcaccgtcaccacagatctaggcatcgccaccgctatgaagacgaggaa
gacgacgatgagcaccgtcgatctaggagagagaaatctcacgacgacgaacaccaccac
cgtcaccatcataaatcgagggagtactccgtggatgagcagggggatgaggaggaagat
gctcgtgattcgaggagagggagggaaggcagtagggataaggataaggatagaaagaag
aggaaggatagggaggtgagtgaggagaggattgatgacaagagggctaaggtttctgat
gtcaagaaggagaggcgtcgttttgatgacgacgataatggtagaattgttaaggatgaa
aggaaagagaagaggagatttgaggatgatggaaatggtagggttaagattgaagaagct
aagacgaagaaagaagatggcggccgcggcgatggcagtggggagattgttgataataat
aatggcaggaagagggataggagaagatttgaagatggtgatgttaagaaagaaagtgtt
gcagagcctactggcaggagtggttcctttccaaacgatggtgctgagaaatcactcaat
gtgtcatcaagattttcatctgaaacattccccgcaaataaccatactgccaccaaggta
tcttcaatttctaccacccatgaaaataagggagttaatattaccggatctcatgcggtt
actggaaaatctagtacagatggaacaccttcaactgctggcaagactggaaatatatcc
cttgatgctttagcaaaagctaagaaagctttacagatgcagaaggaactcgctgcaaaa
atgaagaagattcctttgctaaacagaggtactagctcaagcaatgctgtcaatgctcaa
gtgggctcgaaagaagaaattaaaccacctagtgctgctgggattcagcagacaccatca
acatctacctttcccccagctgctgcttctgctaagacggctagcatgatagaccctgcc
aaatatgaagctgtgaagcgtgcacaagaacttgctgccaagatggggtttcgccaggat
acagaatttgctcctttgataaatttgttccctgggcagttgccacttgatactaccgcg
cttcaaaagcctgcaaaggctccagttcttcggttggatgctcacggtagggaagttgat
gaggatggaaatgttgtctacatttctaaaccaagcagtctaagtacccttaaggtgaat
attaacaagcagaaaaaagatgcattccagattcacaagccagaattggaagttgatcca
gataagaatcctcattttgatccaaggatgggtattgacaaaaccaagcttctcaggccc
aaaagaatgaatttcctgtttgttgaggaaggtaaatggtcaaaagacgctgagattatc
aaactgaagagtcaatttggagaagcccaagccaaggagcttaaggctaagcaggcacag
ctggctagggcaaaggcggagccaaacataaatccaaatttgattgaggtttcagaaaga
gttatcacaaagaaagagccaaaggagtctattccagaagttgaatggtgggatgtgcct
cttctgcgttctggtgattatgctgatattgctgatggtagcagcattgaagatagagtg
aagatggagaaaatcacgatctatcttgagcatccccgtcctattgaacctcctgcagag
ccagccccaccacaacctcaaccgcttaaacttacaaagaaggaacagaagaaactccgt
acacagcgtcgcttggcaaaggagaaggataggcaggagatgattaggcaaggtttaatc
gagccccccaaacctaaagttaaaatgagtaacatcatgagagtgttggcctctgaggca
acccaagacccaacgaaaatggagatggaagttcgaactgctgcagctgaacgtgagcag
gctcatgtggacaggaacattgctcgcaaactgacacctgctgagcggcgtgaaaagaaa
gagaggaagctgtttgaagatccaaatactttggaaactattgtttcagtgtacaagatc
aatgacttttcacacccacaaaataggttcaaagttgacatcaatgcgcaagagaaccgt
ttaactggttgcgctgtcatttctgagggttttagtgtcgtggttgttgaaggtggaagc
aaatccattaaaaggtatggaaagctgatgcttcggcggataaattggcttgccaaggtg
ttaaatgaggacggggaggaagatgaagatgaggaaaaaccaccaaataaatgttctctg
gtttggcaaggaagtgtggcaaaacctagttttaaccggttcttcatccatgattgcaga
actgaggctgctgcccgcaaagttttctctgatgctggtgttggccactactgggaattg
gctgcaaactttgtggatgatcagatataa
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