Spinacia oleracea (spinach): 110792556
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Entry
110792556 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110792556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110792556
03009 Ribosome biogenesis [BR:
soe03009
]
110792556
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110792556
Spliceosome [BR:
soe03041
]
Complex A
U1 snRNP components
U1 related factors
110792556
Complex B
110792556
Ribosome biogenesis [BR:
soe03009
]
Eukaryotic type
Pre-60S particles
Helicases
110792556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110792556
NCBI-ProteinID:
XP_021853076
UniProt:
A0A9R0JZP3
LinkDB
All DBs
Position
5:5938774..5946765
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AA seq
651 aa
AA seq
DB search
MNYNHYDNRYTDPTSYRERRSDFIGPPAPHVGGPVGGAPPPYVPPYGGSGSTVGGPLPGS
GPFNGYPFDPPVSRGFDMGRGGGHASRGPAPRGRGSVGGGFRSSDLGGGRGDFYHSNGGG
RGFDSRRGGGGAGGGGGRGFDSNRGGGRGFSSGGRGGFGGGRGGGRGRGGGDNLDSLSLP
KQEFRNLVPFKKDFYMECASVRAMSEQEVMMYRTKRDISVEGHDVPRPIRWFPEAGFPAY
CLDVIAKLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVSAQPKLEY
GDGPIVLVLAPTRELAVQIQEESLKFGNQANVRSICVYGGAPKGPQIRDLKRGVEIVIAT
PGRLIDMLEGKHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRLDRQTLYWSATWPR
EVETLARQFLRDAYKVVIGSQDLKANHSIHQVIEVMTDLEKYNRLITLLKEVMDGSKILI
FVERKKGCDQVTRQLRMDGWPALAIHGDKDQSERDWVLSEFKSGRSPIMIATDVAARGLD
VKDIKCVINYDFPTSLEDYIHRIGRTGRAGAKGIAYTFFTQSNAKFTRELMKILREAGQA
VPPALSAMASSGGSNFGGSGGNFRSRGRGGFGGNRSQISGSNTIPVGRRPW
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaactacaaccactacgacaaccgttacactgacccaacttcttaccgcgaacgccgc
agtgattttattggtcccccggcacctcatgtgggtggtccggtgggcggcgcaccacct
ccttatgtaccgccttatggtgggtctgggtccactgtagggggacccttaccgggatcc
gggccttttaatgggtacccgtttgaccctccggttagccggggctttgatatgggtcgt
gggggtggtcatgctagtagagggccagctccaagaggtagaggtagtgtcggcgggggg
tttaggagtagcgatttagggggtgggagaggcgatttctatcactctaatggtggtggt
agagggtttgattcacgaagaggcggcggtggagctggaggaggaggagggagagggttt
gacagtaatcgaggtggcgggagagggtttagtagtgggggtagaggagggtttgggggt
gggcgaggcggagggagaggtcgaggaggaggtgataatttggattccctttcactacct
aaacaagagtttaggaatttggttcccttcaagaaagatttctacatggagtgtgcatcg
gtgagagctatgtcggagcaagaggtgatgatgtatcgaactaagcgtgatatttctgta
gaagggcacgatgttcctaggccgattaggtggtttcctgaagctggattccctgcctat
tgtcttgatgtcattgcgaagttgggttttgttgagcctacaccaattcaatctcaagga
tggccgatggctctaaaagggagagacttgattggcattgctgagactggctctgggaaa
actttggcttatttgctgcctgctattgttcacgttagtgctcagccaaaactggaatat
ggtgatggtccaattgtactagtattagctcccactcgagagttggctgtgcaaattcaa
gaggagtctctgaaatttggaaatcaggctaatgttaggagtatttgtgtttatggaggg
gctcccaaaggaccccaaatccgagatcttaaaagaggcgttgagatcgtaattgctaca
cctggtcgattgatagatatgttggaagggaagcacactaacttgaaaagagttacatat
ttggtgttggatgaggccgaccgtatgttagacatggggtttgaacctcagatcaggaaa
atagtctcccagattcgacttgatagacaaactttatactggagtgctacatggccacgt
gaggtagaaaccttggcaaggcaattcctacgcgatgcttataaggttgtaattggatct
caagatctgaaggctaatcattctattcaccaagttattgaagtcatgactgatttggag
aagtacaacaggttaattacactgctcaaagaagtaatggatgggagcaaaatccttata
tttgtggaaagaaaaaaaggatgcgaccaggtcacacgacagttgagaatggatgggtgg
ccagctttggccatccatggtgataaagaccagtcagaaagagactgggttctatcagag
tttaaaagtggcagaagtcctataatgattgccactgatgttgctgcacgtggtcttgat
gtgaaggacataaaatgtgtgataaattatgatttcccaacaagtcttgaagattacatt
cacaggatagggagaactggccgtgctggggctaaggggattgcctacacatttttcact
cagtcaaacgctaagtttaccagggaactgatgaagatcttgagagaagccgggcaggcg
gttcctcctgctttgtctgcgatggcaagttcaggtggctccaattttgggggttcaggt
ggcaatttccgctctaggggccgtggaggatttggtggtaacagatcacagatatctgga
tcaaatactatccctgttggcagaagaccatggtag
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