Spinacia oleracea (spinach): 110792682
Help
Entry
110792682 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110792682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110792682
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110792682
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110792682
mRNA degradation factors
3'-5' decay
Ski complex
110792682
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
110792682
NCBI-ProteinID:
XP_021853192
UniProt:
A0A9R0IPQ1
LinkDB
All DBs
Position
6:102646674..102684959
Genome browser
AA seq
1355 aa
AA seq
DB search
MDRVTVANDLSFRVGLTGHSGHLCIQPLPPVEADNPLRDLPEFVLPPAFPEETKDSIKEY
IEDKYLTPRLDLHEFSPEKAGRDWDFDWFSKAKIPVEPSLARTAVFPEWELPFRRKKGQE
QGIWEPQSVQVEISELTAGVEDSSALPRITGPAKDFVRGSLHSRPFHPGGLDGSQSLPRV
VPDGSLNGDWTREVLEGGSAEKAPPSFRQGLDFGNLKAYPSSWSVNECQVFPKAVSDEKQ
STMSLQFDDLFKRAWENDFAENDESDDNESEAECKEPEAGCNESEIQVNEAELEGDVADV
NLSELDQILSVESAVLDLKVDVKIEEGDKERKESWAIRESNNSIADRFHELVPDLALEFP
FELDRFQKEAIYYLEQGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQ
KYRDFTGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN
DAERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKIIRVTGTTKRPVPLEH
CLFYSGELYRICENEIFLTQGLKAAKDAHKKKNSNTGRSGPTAHSGSAAGSGAAHAQNHE
NSHRGKQKHSVNFSGSGTGSGNFTIGSQTNFGLRRSDASLWLQLVNKLLKKSLLPVIIFC
FSKNRCDRSADSMTSIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLHRGIG
VHHAGLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQII
PGEYTQMAGRAGRRGLDKFGTVIIMCRDEILEERDLKHVIVGHPTRLESQFRLTYIMILH
LLRVEELKVEDMLKRSFAEFHSQKKLPEKQQLLMVKLSQPTKTIECIKGEPSIEEYLEMY
TEAEGYSNQVTEGVMQSHTAQQFLVPGRLVVVKSQTFQDHLLGVVVKAPSANLKKYLILV
LKPDLPPTMQSPASSGEILDIGSNKSGEGFFVLPKGKRGLDDEYCSSVTARKGSGVVNIK
LPYQGVAAGVNYEVREADSKEFISICNCKIKIDQVRLLEDVSTAAYSKTVQQISEKKSNG
SKYPPALDPIKDLKLKDVTLVDAYYKWNKILQNMSENKCHGCIKLDEHMKLFKEIFKHRE
EVNELKFQMSDKALQQMPDFQGRINVLKEIGCIDDDLVVQIKGRVACEMNSGEELICTEC
LFENQLENLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVRRLYDTAITLGQLQEGFKI
PVNPEEYARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNA
AAIMGNSALYKKMEAASNAIKRDIVFAASLYITGI
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtaacagtagcaaacgatttgtcgtttcgggtcgggctcacgggccatagc
ggccatctttgcatccaacctctccctcccgttgaagccgacaatcctctccgcgacctc
cctgaatttgttcttccacctgcatttcccgaggaaacaaaagattctattaaggaatat
atagaggacaagtatttaacaccaagattggacctccatgagttctctcctgaaaaagct
ggtagggactgggattttgactggttcagcaaggccaaaatacctgtggagccatcatta
gcacggacagctgtgtttcctgagtgggagctaccatttaggcgcaaaaaaggacaagag
caaggaatatgggagcctcagtcagtgcaggtggagatatcggaattaactgcaggagta
gaagactctagtgctttgccacgaattacagggcctgcaaaggactttgtgagggggagc
cttcacagtcgcccttttcatccaggtgggttagatggatctcagtctttaccaagggtt
gttcctgatggttctttgaatggtgactggactcgtgaggttcttgagggtggttctgca
gaaaaggctcctccaagctttaggcaaggattggatttcggcaatctcaaggcatatcct
tcttcgtggagtgtgaatgagtgccaagtttttccaaaggctgtatcagatgagaagcag
agtacgatgtctctgcagtttgatgatttgttcaagagagcgtgggaaaatgattttgct
gaaaacgacgaatctgatgataatgaatcggaagctgagtgtaaggaaccagaagcaggg
tgtaatgaatctgagatacaagtcaatgaagctgaactcgaaggtgatgttgcggatgtt
aacttatcggaattagatcaaattctatctgtggaatctgcagtgttggatttaaaggta
gatgtgaagattgaagaaggtgacaaagagcgtaaagagtcctgggctatccgtgaaagc
aacaatagtatcgcagatcgttttcatgaactcgttcctgatttggctctcgagtttccg
ttcgaattagatagattccagaaggaggctatctactatcttgaacaaggggaatctgtt
tttgtggcagctcatacatcagctggaaagacagttgttgctgaatatgcatttgcgttg
gcatcaaagcattgtactagagctgtatacacagctccaatcaagacaatcagcaatcag
aaatacagagatttcactgggaaatttgatgtaggtcttctaactggcgatataagcttg
aggccagaggcatcctgtctcatcatgactactgaaatattgaggtcaatgttgtataga
ggtgctgatattatccgtgacattgaatgggttatatttgatgaagtgcattatgtcaat
gatgctgaaagaggtgttgtctgggaagaagttataataatgcttcctcgtcacattaat
ttcgtcctcctctccgccacagttccaaatacaatagaatttgctgactggatcggcaga
acaaaacagaagatcatccgtgtaactgggaccactaagagaccagtcccgttggagcac
tgcctgttttactctggagaactctacagaatttgcgagaacgaaatttttttgacacag
ggcctgaaagctgctaaagatgcacacaagaaaaagaattctaatactggcagaagtggc
cctacagcgcattcagggtctgcagcgggttctggtgcagcacatgctcagaatcatgaa
aattctcatcgtgggaaacaaaaacattctgtcaacttcagtgggagtgggactggctca
gggaactttacaattggaagccaaaccaactttggcttaagacgatcagatgcctctttg
tggttgcaacttgtgaacaagctcttaaaaaaatcacttttacctgtaatcatattttgc
ttttcaaagaaccgttgtgatagatcagctgatagtatgacgagtatcgatcttaccagt
agttcggaaaagagtgaaattcgtgttttctgcgacaaagcattttcacggctgaagggg
tctgaccgaaatttacctcagattctcagagttcaaagtcttcttcatagaggaatcggt
gtccatcatgctgggcttctcccaatcgtgaaagaagttatagaaatgctattctgccgt
ggtgtaattaaggttctgttttcaacggagacatttgctatgggtgtcaatgctcctgcc
agaacggtcgtttttgatactctgagaaagtttgatggaaaggaatacaggcagataatt
ccaggagaatatacacaaatggctggtcgtgctggcagaagagggcttgataaatttgga
acagttataataatgtgccgtgatgagattctggaagaacgagatctgaaacacgtcatt
gttggacatcccaccagacttgaatctcagttccgactaacttatattatgattctgcat
ctacttcgtgttgaagaattgaaggtagaagacatgttaaaaagaagttttgctgaattt
cattctcagaagaaacttcctgaaaagcaacaacttctgatggtaaagctttcacagccc
acaaaaacaatagaatgtataaagggtgaaccatctattgaggaatatcttgagatgtat
acagaggctgagggttattcaaaccaggtaacagagggtgtcatgcagtctcataccgcg
cagcaatttcttgtgcctggaagattggtagtagttaaatctcaaacgtttcaggatcat
ttactaggggtggtagtgaaagcaccttcagccaacttgaaaaagtacttaattttagtg
ctgaaacctgatttacctccaacaatgcaatcccccgctagcagtggtgagattcttgac
atagggagtaacaaatctggagaaggcttctttgtattacccaagggtaaacgtggttta
gacgatgaatactgttcttctgtcactgctcgcaagggatctggtgtagtcaacataaaa
ttgccttaccagggagtggctgctggtgtgaactatgaggtcagagaagcagacagtaaa
gagttcatttccatctgcaattgcaaaataaagattgaccaagttcggcttcttgaagac
gttagcactgctgcctattcaaaaactgttcagcaaatttctgaaaagaaatccaatggg
agtaaatatcctccagctttggatcctataaaggatctgaagctgaaagatgtgaccctt
gttgatgcatactataaatggaacaagatattgcagaatatgtctgagaacaagtgccat
ggatgtataaagttagatgaacatatgaagttatttaaggagatattcaagcacagagag
gaagtcaatgagttgaagtttcaaatgtctgacaaagcacttcaacagatgcctgacttt
caggggcggataaacgtcctgaaggaaatcggttgtatagatgatgaccttgtggttcag
atcaaaggccgtgttgcttgtgaaatgaactccggagaggagcttatatgcactgagtgt
ttgtttgagaaccagttagagaacctggaaccagaagaagcagttgctgtaatgtctgca
tttgtttttcagcagaagaatacttctgagccttctctaactcccaagctatctgctgca
gtacggagattatatgatacagctatcacactgggccagttacaggaagggtttaaaatc
ccagttaaccctgaggagtatgctcgagaaaatcttaagtttggtcttgttgaagtggtt
tatgaatgggcaaagggcacggaatttgctgatatttgtgagctgacagatgttcctgaa
ggcttgatagtgaggaccattgttcgacttgatgaaacttgtcgagaattcagaaatgct
gcagctattatgggaaattctgctctatacaagaaaatggaagctgcttcaaatgccata
aaacgtgatatcgtctttgcggctagcttgtacatcacaggaatctaa
DBGET
integrated database retrieval system
