Spinacia oleracea (spinach): 110793043
Help
Entry
110793043 CDS
T05137
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110793043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110793043
Spliceosome [BR:
soe03041
]
Complex B
Other components
Prp19-related factors
110793043
Complex C
110793043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
zf-CCCH
RRM_YTH1
RRM_occluded
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
110793043
NCBI-ProteinID:
XP_021853560
UniProt:
A0A9R0K0X1
LinkDB
All DBs
Position
3:complement(27547200..27553602)
Genome browser
AA seq
489 aa
AA seq
DB search
MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISTNDAIPKSDVNREYFAE
EHDRKARAGLDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVVGELSQQNIKDRYYGVNDPVAMKLLNKAGEMQTLDPPDDESIKTLYVGGLDARIT
EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTRDAAEKAAGELSNKLVVKGLRLKLMWGR
PQQPKPEIDGAEQAKQQAAVAHSGMLPRAVISQQTQFHPPGTSQDQIPPPMSYFNIPAPP
QQDRAFYPSMDPQRMGALVSSQDGSGSSNGPSGSGENKTGSEKQPQAHQPYGYQGMPPPP
GHYQQPFYPPYGGYMPPPPQYQQYPPQYHHHHHHQPAVAPQPPPASHHPQPQQPPQPQQQ
PVSSEVSQK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctccgagatcttgaagccgatggctgggagcgttccgacttccct
atcatctgcgaatcttgcctcggtgacaatccatatgttcgtatgactaaagcagaatac
gacaaggaatgtaagatctgtacaaggccttttacagttttccgctggagaccaggtcga
gatgcaagatataagaaaacagagatttgccaaacatgcagtaaattgaaaaatgtatgt
caagtgtgtctgttggatcttgagtatggtttgccggtccaggttcgagacactgctctt
agcatcagcactaatgatgccattcccaagagtgatgtcaatagggaatattttgctgag
gaacatgaccgcaaggctagagctggtttggattatgaatcctcttatgggaaggtccgg
gctaatgatacgattttaaagcttcagagaacaacaccatattataaaagaaacagagca
catgtttgcagtttctatattagaggtgaatgcacaagaggtgctgagtgtccttaccgg
catgagatgcccgtcgtcggcgaactatctcagcaaaacattaaagatcgttactacgga
gtgaatgatccagttgcaatgaagctcctgaacaaggctggtgaaatgcagacacttgat
cctccagacgatgagagcataaagactttgtatgttggtgggcttgatgccaggattact
gagcaagacttgagggataacttttatgcccatggtgaaattgaatccatacgaatggtt
ctccagcgagcttgtgcttttgtaacctacaccacgcgggatgctgcagagaaagctgca
ggagaactctcaaacaagcttgtagtgaagggtctgaggctaaagctgatgtggggtaga
cctcaacaacccaagcctgagattgatggtgctgaacaagcaaagcaacaagctgcagtg
gcacatagtgggatgcttcccagggctgttatatctcaacagactcaatttcatcctcct
ggcacaagtcaggatcagatccctcctccaatgtcttattttaatattccagccccacct
cagcaagatagggccttctacccatcaatggatccccaacgaatgggtgcccttgtctca
tcgcaagatggatctggatcctcaaatggaccttcaggatcaggggaaaacaaaacaggc
tccgagaagcagcctcaagcccaccaaccatatggttaccaaggtatgccacctcctcct
ggtcactatcaacaaccattctacccaccatatggtggttatatgccacctcctccacag
taccagcagtaccctcctcagtaccaccaccaccaccaccaccaacctgcagtggctccc
caacctccgccagcatcccaccacccccagccccagcaaccaccccagccccagcaacag
cctgtatcatcagaggtttctcaaaagtaa
DBGET
integrated database retrieval system
