Spinacia oleracea (spinach): 110793119
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Entry
110793119 CDS
T05137
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110793119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110793119
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110793119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_SPT8
Tricorn_2nd
WD40_RFWD3
Beta-prop_HPS5
WD_LRWD1
Beta-prop_RIG_1st
WD40_like
NBCH_WD40
WDR54
B-prop_COPA_B_2nd
Beta-prop_DCAF12
PROPPIN
Motif
Other DBs
NCBI-GeneID:
110793119
NCBI-ProteinID:
XP_021853653
UniProt:
A0A9R0IRF4
LinkDB
All DBs
Position
1:66641514..66661376
Genome browser
AA seq
745 aa
AA seq
DB search
MMYGESPQQQQQQQQHHQQHHQQQHQPQQPGPPPHHMQHAPPPHMHPPPQYQHPPPPPQH
QQPLPGMEFHRGPPPPPPPTMMRQPSASSTNLPPPPDFHHPQQPPYDSHADSYAAKRMRK
LTQRRAVDYTSTIVRYLQVRMWQRDSRDRTILQPTPAAAVDLLPPAAYSDNPSTSFAAKF
VHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQAHEQAVRSMVWS
HNENWMVTGDDGGSIKYWQNNMNNVKVNKSAHKESVRDLSFCRTDLKFCSCSDDTSVKVW
DFARCQEETSLTGHGWDVKTVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHKNTV
LSVKWNDNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSY
DGSIFHWLVGHETPQIEVPNAHDNAVWDLAWHPAGYILCSGSNDHTTKFWCRNRPGDTGR
DKFNVGYNQGYGEQNPAFANRAGGNFSFQEPPTMPGSFPPGLARNEGTIPGVGAAMPLSI
PGVDNSSHGEQKQTHPPPLPPGPHPSMMPPNQPQYQHNPQQMPSFPQPPPNMPQLQPPSH
MPLHQHHHIHRPPPQMSPQMPGSMPMPPTSVPMPMPGPMGMQNATNQMVPQMQQGHFMGM
NPMQPGPIPSGGMPPSGGFSNGMPNMQGPQSTSGQQMYPPAGTFNRPQGGQMPMMPGLGP
YQLSNQSGMPQPPLPPGPPPQQTQQ
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggagaatctcctcaacaacagcagcagcagcagcaacaccaccaacaacac
caccaacagcaacaccaaccacagcagccggggcctccgccgcaccacatgcagcacgca
ccaccgccacatatgcatcctccgccgcagtaccagcatccgccacctcctccgcagcat
caacagcctcttccgggaatggagtttcaccgtggaccaccaccacctcctccgccaaca
atgatgcgacagccttctgcttcttcgactaatctccctcctcctcccgattttcaccat
cctcagcaacctccttacgactctcatgctgatagctatgctgccaaaagaatgagaaag
ctcacgcaaagacgagctgtggactatacaagcacaattgtccgatatcttcaggttcgc
atgtggcagcgtgattcaagagaccgaacaatattacaacctactcctgccgctgctgtt
gacttgttgccaccagctgcatattcggataacccatcaacaagctttgcagcgaaattt
gttcacacatctctgaacaaaaatcgatgctctattaatcgtgttctgtggacacccaat
ggaaggcgtctaatcacaggttcacaaagtggtgaatttactctttggaatgggcagtca
ttcaactttgagatgatccttcaggctcatgaacaagcagtcaggtctatggtatggagt
cataatgagaattggatggtcactggggatgatggaggctccataaagtattggcagaac
aatatgaacaatgtcaaggtcaacaaatctgctcacaaagaatctgtacgggatctgagc
ttctgccggacagacctaaaattctgctcttgctctgatgacacttctgtaaaagtttgg
gattttgccaggtgtcaagaggagacatcattaacaggccatggttgggatgtgaagact
gttgattggcaccctacaaagtctttactagtctcaggtggtaaagataaccttgtgaaa
ctctgggacgctaagactgggaaggagctctgctcatttcatggtcacaagaacactgtg
ctcagtgtcaaatggaatgacaatggaaattgggtactcactgcttccaaggatcaaata
atcaagctttatgacataagggctatgaaggagcttgaatcatttcgtggccacaggaag
gatgtcactgcactggcgtggcatccgtttcatgaagaatactttgttagtggaagttat
gatggctctattttccattggcttgttgggcatgagactcctcaaattgaagttccaaac
gcccatgataacgctgtgtgggaccttgcttggcatcctgctggatatatattgtgcagt
gggagcaatgatcacacgacaaaattttggtgcagaaataggccaggggatactggtcga
gataagtttaatgttggctacaaccaaggctacggcgaacaaaaccctgcttttgcaaat
cgtgcaggtgggaatttctcttttcaggaacctccgacaatgccaggatcatttccacct
ggattggcacgaaacgagggtacaattccgggtgtaggtgctgcgatgccgctttccatt
cctggcgtggataattcttctcacggagagcagaagcagactcatccacctcctttgcca
ccaggcccacatccttctatgatgcctcctaatcaacctcaatatcaacacaatcctcaa
caaatgccttccttcccccagccacctccaaatatgccccagctacagcctccatctcat
atgcccctccatcaacatcatcatatccatcgtccccctccccaaatgtctcctcaaatg
cctggatctatgccgatgccacctacatcagttccaatgccaatgcctggtccaatggga
atgcagaatgctacaaatcaaatggttccacaaatgcaacaagggcatttcatgggcatg
aaccctatgcagccaggacccatacctagtggtggaatgcctccctctggaggtttctca
aacggcatgccaaatatgcagggcccacaaagtacgagtgggcaacaaatgtatccacct
gcaggaacattcaaccgtccgcaaggtggacaaatgccgatgatgcctgggcttggtcct
tatcagctttctaatcaaagtggtatgccacagcctcctttaccacctggtccccctcca
cagcaaacacaacagtaa
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integrated database retrieval system
