Spinacia oleracea (spinach): 110794068
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Entry
110794068 CDS
T05137
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110794068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110794068
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110794068
Spliceosome [BR:
soe03041
]
Complex C
Other components
Step II factors
110794068
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
SLFN-g3_helicase
AAA_19
Flavi_DEAD
AAA_30
T2SSE
nSTAND_NTPase5
nSTAND3
Sigma54_activ_2
AAA_24
AAA_16
SRP54
AAA_7
PhoH
Sigma54_activat
ATPase
ABC_tran
NB-ARC
Motif
Other DBs
NCBI-GeneID:
110794068
NCBI-ProteinID:
XP_056686341
UniProt:
A0ABM3QSI7
LinkDB
All DBs
Position
1:complement(134691919..134698588)
Genome browser
AA seq
880 aa
AA seq
DB search
MRSDGSMMSRAQSKRHSQLSAYKQQWEDKQLMRSGAVRGTEVQTEFDNEEENKVVLLVHD
IKPPFLDGRVVFTKQADPVMPLKDPTSDMAIISRKGSGLVREIHEKQSMNKSRQRFWELA
GSKLGDVLGVEKTAEQVDADKAVVGEDGEVDFKEDAKFAQHLKKDEAVSEFAKTKTLSQQ
RQYLPIYSVRDDLLQVIRENQVVIVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQPRRV
AAMSVAKRVSEEMETDLGDKVGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDAELEKYRV
VVMDEAHERSLNTDVLFGILRKVVAQRRDFKLIVTSATLNAEKFSQFFGSVPIFHIPGRT
FPVNTLYSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLI
SSTQKAVAKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDT
GYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLHSPV
PEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLG
WKMVEFPLDPPLAKMLLMGAKLHCLDEVLTIVSMLSVPTVFFRPKDREEESDSAREKFFV
PESDHLTLLNVYQQWKSNDYRGDWCNDHFLQVKALRKAREVRSQLMDILKQLKITLTSSA
DWDMVRQAICSAYFHNSAKQKGIGEYVNTRNGIPCHLHPSSALYGLGYTPEYVVYHELLL
TTKEYMQCVTAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKEEKTAMEEEMENLRKEQA
ETEIKRKEKERQKRAKENEKIAMPGTRRGSTYLRPKRLGL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgagaagcgatggaagtatgatgtcacgtgctcagagcaagaggcattcacagcttagt
gcatacaagcaacaatgggaggacaaacaactgatgagatcaggtgcagttcgaggtact
gaggttcaaactgaatttgacaatgaagaggagaacaaggttgtgcttttagttcatgat
ataaaacctccattcttggatggtagagtcgtttttactaagcaggcagatcctgtaatg
cctttgaaagatccaacatcagatatggctattatatcccgtaaaggatctggtttagtg
cgggaaattcatgaaaaacaaagcatgaacaagtcacgccaaaggttttgggaacttgct
ggttctaaacttggtgatgtccttggtgttgagaagacagcagaacaggttgatgctgat
aaagctgtggttggtgaagatggggaagttgatttcaaagaagacgcaaaatttgctcag
catttgaaaaaggatgaagcagtgagtgagtttgcgaagacaaaaaccctgtctcagcag
agacaatatcttccaatatactctgttagggatgacctattacaggttattcgtgagaat
caggttgttatcgttgttggagagacgggttcaggaaagacaactcaactaacacagtat
ttgcatgaggatggttacacttcgaatggcattgttggatgtactcaaccaaggcgtgtt
gcagcaatgagtgttgcaaaaagagtcagtgaagagatggaaacggatctgggagataaa
gttggttatgctatccgctttgaggatgttacaggacccaacaccgtgattaagtacatg
acagatggtgtacttttacgtgaaacactaaaagatgctgaacttgagaaataccgtgtc
gttgtgatggatgaggcgcacgagagatccctgaacacggatgtgttgtttggcatatta
aggaaggtggttgctcaacggcgagattttaagctaattgtaacttcagccactctgaac
gcggagaagttctctcaattttttggaagtgtcccaatattccatattcctgggagaaca
tttcctgtgaataccttgtacagtaaaacaccttgtgaagactatgttgaaggtgctgta
aagcaagcgatgactatacacataacctccccacccggcgacatcctgatttttatgaca
ggacaggatgagattgaggcagcatgctatgctcttgccgagcgcatggaacagctaatc
tcctcaacacagaaggcagttgcaaagctccttattcttcccatttactcgcagcttccc
gctgatttacaggcaaaaatattccaaaaagctgaagacggagcaagaaagtgcattgta
gcaaccaacattgctgagacatctctgactgtagatggtattttctatgttatcgacacg
ggttatggtaaaatgaaggtctacaatccaagaatgggtatggatgctcttcaagtcttc
cctgtgagccgtgctgctgctgaccagcgtgctggacgtgctggtagaactgggcccggc
acttgctaccgtctatatacagagagtgcgtatctgaatgagatgcttcatagtcctgtt
cctgaaattcagaggacaaatcttggtaatgttgttttgcttctgaaatctctcaaaatt
gagaacttactagactttgatttcatggacccacctccacaagaaaacatcctaaattcc
atgtaccagttgtgggtactgggtgcccttaacaatgtcggtggcctaacagacctcggt
tggaaaatggtggaatttccgttggacccgccactagcaaagatgttactgatgggtgca
aagctgcattgcctcgatgaagtgttgactatagtgtcaatgctttcagttccaacagta
ttcttccgtcccaaagacagggaagaagagagtgactctgctagggaaaagttctttgtc
cctgaatcggatcacttaacccttctcaatgtgtaccagcaatggaaaagcaacgactat
cgaggagactggtgcaatgatcattttctacaggttaaagctttacggaaggctagggaa
gtaagatcacagcttatggatatactgaaacaacttaagataacacttacttcatctgct
gattgggatatggttagacaagctatatgttctgcatatttccacaattctgctaaacag
aaggggattggtgagtatgttaacacaaggaacggcatcccgtgccatttgcaccctagc
agtgctctttatggattagggtacacaccagagtacgtggtttatcacgaattgcttttg
actacaaaggagtacatgcagtgtgttactgctgttgagccgcattggttagcagaatta
gggcctatgtttttctcggtgaaagaatctgatacgtcgttgttggagcataagaagaaa
cagaaggaagagaagacagctatggaagaagagatggagaatctaaggaaagaacaagca
gaaactgagattaaaagaaaggagaaagaaaggcagaaacgagctaaagagaatgagaag
atcgcgatgcctgggactcgccgtggttccacatacctcaggcctaaaaggttgggtttg
taa
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integrated database retrieval system
