Spinacia oleracea (spinach): 110794317
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Entry
110794317 CDS
T05137
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
110794317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soe03036
]
110794317
03400 DNA repair and recombination proteins [BR:
soe03400
]
110794317
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110794317
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
110794317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
110794317
NCBI-ProteinID:
XP_021854967
UniProt:
A0A9R0ISV0
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Position
5:complement(1724930..1732998)
Genome browser
AA seq
1227 aa
AA seq
DB search
MEEEEDAILLNSLGVTSANPDDIERDILNKATTNVESSSQAGRRTTEADDFTDTTEDQDS
SSSQVELLKKLRAIEVEIHAVASAVEQTKSGGKNEELDSESHGKKEEDDEGIDKAIPRDS
ALQHALAADRLRSLKKTRAELRKELSSICQDGKTVGVEEKLLKYLVREESKSKRKLKEVQ
GPSKESKKKKAVSYQEDDEFDAVLNAASGGFVETERDELVRKGLFTPFHKLKGFERRIQQ
PETSSLQQNGNDIADRASQSVAKAVRSLTEAAQARPTSKLLDPKDLPRLDAPSFAFNRLS
KSFKVSKSLDDGEKSNDAKRKKRRPLPGERWRKRIAKEEIEVEEPDVQDDLITGTQDADN
EDGDVTPSVTLEGGLKIPETIFDKLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQV
LAFLGSLHFSKMYKPSIIVCPVTLLRQWKREARKWYRSFHVEILHDSAVDGGRKQKQSES
DESENESEGSSESDQDRVPPSKSAKKWDSVIKRVLRSESGLLITTYEQLRILGEKLLDIE
WGYAVLDEGHRIRNPNAEVTIVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV
LPVFEAEFAVPIQVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLPKKTE
HVLFCSLTPLQRSVYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHASQNP
DYGNLERSGKMKVVAQVLKMWKEQGHRVLLFAQTQQMLDILENFLISNEYSYRRMDGLTA
VKQRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWR
VGQTKDVTIFRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDLKDLFVLTDE
EHAGSTETSNIFGQLSEQVNVISKEKEDQQNNNCAGATAACADDMELDRENSSQQELSGN
KEKEEAENGGEADEETNFLKSLFDTHGIHSAINHDAIMDAHDEEKIRLEEQASLVAQRAA
EALRQSRMLRSKESISVPTWTGKSGAAGAPSSVRRTFGSTVNSQLVRNSRSSEEGAPKNG
TTNGFVAGAPSGKALSSAELLAKIRGNRASAVGDGLEHQFGLSTNRAGSSVAGPSRGSQN
LSVAGPSRASQNLSGVPPEVLIRNICMFIQNSGGSTSSATIVEHFRDRIPSKDLPLFKNL
LKEIAVLEKRRNGSVWVLKPEYQLSRS
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaagaagacgcgattttgctcaacagtttaggggttacctcagcaaatccc
gatgacattgaaagagacatcttaaacaaggctacaactaatgttgaaagcagttctcag
gctgggaggcgaacaacggaagcagatgatttcaccgataccacggaagatcaagattcg
tcttccagccaagtggaactgttgaagaaattaagggccatagaggttgaaatacatgct
gtggcttctgctgttgagcaaacgaaaagcgggggaaagaatgaagagcttgactctgag
agtcatggtaaaaaggaagaggatgatgagggaattgacaaggccatacctcgtgattct
gcccttcagcatgctttggctgctgatcgactgagaagcctgaaaaagacgagggctgaa
cttcgtaaagagctatcaagtatatgtcaagatggaaaaacggttggggttgaggaaaag
ttgttgaagtatttggtcagggaagagtccaagtcaaagcggaagttgaaagaggtacag
ggtccgagcaaagagtccaaaaagaagaaggctgtctcataccaagaggatgatgaattt
gatgctgttctaaatgccgcatctggaggttttgttgaaacggaaagggatgaactcgtg
cgaaaaggactttttacaccttttcataagctgaagggcttcgagcgccgcatacagcaa
ccagagacatcaagcctacagcagaatgggaatgacatagctgatcgtgcttctcagagt
gttgccaaagcggtaaggtcactaacagaggctgcacaagctcgtccaacatctaagctg
cttgatccaaaagatttgccgagacttgatgcaccatctttcgcttttaatagactaagc
aagtcttttaaagtttctaaaagtttagacgatggagagaagagtaatgatgcaaaaagg
aaaaagaggaggcctttgcctggtgagagatggcgaaaacgcattgctaaggaggagatt
gaggtagaggaacctgatgtacaagatgacttaattacaggaacccaggatgctgataat
gaagatggtgatgtgactccttccgtaacccttgaaggtgggttaaagatccctgaaaca
atttttgataagctgtttgattatcagaaggttggggttcaatggctgtgggagctgcat
tgccaaagagctggaggaattatcggagatgagatgggtcttggcaagaccattcaggtg
cttgcatttcttgggtcattgcattttagtaaaatgtacaaacctagcattattgtctgc
cctgtcacactgttaaggcaatggaagagggaagccaggaaatggtaccgtagctttcat
gtagagatacttcatgattccgctgttgatggtggtcgaaaacaaaagcaatctgaatct
gatgagagtgagaatgaaagtgaagggtcatctgaaagtgatcaggatagagttcctcct
tcaaaaagtgcaaagaagtgggattccgtgataaaacgggttttgagatcggagtctgga
ttgcttattacaacgtacgaacaacttcgtatactcggggagaaactactggacattgaa
tggggttatgctgtacttgatgaaggccaccgtatcaggaacccaaatgcagaagttact
attgtgtgcaagcagctgcagacagttcatcgtatcataatgaccggtgcaccaatccag
aacaaactgtctgaattgtggtctttgtttgattttgttttccctggaaagttaggagtc
ctacctgtgtttgaagcggaatttgctgtgcccatacaggttgggggttatgctaatgca
tctccattgcaagtctccacagcttacaggtgtgcagttgtcttgcgtgatctaatcatg
ccttacctattgcgtcgtatgaaggctgatgtgaatgctcatcttccaaagaagactgag
catgttcttttctgcagtttgactcctctgcagcgatctgtttatagagctttcctagct
agctctgaggtggagcagatttttgacgggaatagaaattctctctatggtattgatgtg
atgcgtaagatatgcaaccatcctgatctacttgaaagagaacacgcttcacaaaatcca
gactacgggaatcttgaacgcagtggtaaaatgaaagttgttgctcaagtactgaaaatg
tggaaagaacagggtcatcgtgttcttctttttgcacaaactcagcagatgcttgatata
cttgagaattttctgattagtaatgagtatagctacaggagaatggatggtcttacagca
gttaaacagaggatggcattgattgatgaatttaataattcaaatgatgtattcatattc
atactcacaaccaaagttggtggtttagggacaaatctaactggggcaaacagggtgatt
atttttgatccagattggaatccatcaacagatatgcaggccagggaacgtgcttggcgt
gttggtcaaacaaaagacgtaacaatttttagattaatcacacgtggaactatagaagag
aaagtgtatcatagacagatatacaagcattttttgaccaataagattttgaagaacccg
cagcagcgaaggttctttaaagcaagagatttgaaggatctttttgttttaaccgatgaa
gaacatgctggatcaaccgagacttcaaatatttttggtcaactatctgagcaagtgaat
gtaattagcaaagaaaaagaagaccagcaaaacaacaattgcgctggagcaacagctgca
tgtgcagatgatatggagttggacagagaaaatagctcgcagcaggaattaagtggaaat
aaagagaaagaagaggcagaaaatggcggagaagctgatgaagaaacaaatttcttaaag
agtctttttgacacacatgggatacatagtgctataaatcatgatgcgatcatggatgcc
cacgacgaggaaaaaataaggctcgaggaacaggcttccctagttgcacaaagggcagca
gaagcacttcgtcagtcacgaatgcttagaagcaaagagagtatatctgttccaacatgg
acaggaaaatccggggctgctggtgcaccttcatctgtacgccggacattcgggtcaaca
gtcaactctcagctggtaagaaactccagatcatcagaagaaggtgcaccaaaaaatggt
acgacaaatgggtttgttgcaggagctccttctggtaaagcattgtcttcagctgagttg
ctggccaaaattagagggaaccgggctagtgcagttggtgacgggcttgaacatcagttt
ggtttgtctacaaacagggcagggtccagtgtagccgggccttcacggggttctcagaat
ctcagtgtagccgggccttctcgggcttctcagaatctcagtggggtacccccggaagtc
ttgatccggaatatctgcatgttcatccaaaatagcggtggtagcaccagttctgccaca
atagtagaacattttagagatagaattccttcaaaagatttacccctgttcaaaaatctt
ttgaaagaaattgctgtattagagaaacgccggaatgggtcggtgtgggttctaaagccc
gaatatcagttgtcgcgttcttga
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