Spinacia oleracea (spinach): 110794780
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Entry
110794780 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110794780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110794780
03012 Translation factors [BR:
soe03012
]
110794780
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110794780
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110794780
Translation factors [BR:
soe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110794780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
BEX
Rad17
T2SSE
AAA_19
Motif
Other DBs
NCBI-GeneID:
110794780
NCBI-ProteinID:
XP_021855430
UniProt:
A0A9R0K1X2
LinkDB
All DBs
Position
6:135795442..135812105
Genome browser
AA seq
1044 aa
AA seq
DB search
MSMRCFPFPTTSVPTTFSLLKHFTSSFPFPISKPPLLHLSPRLFLSSMSSRPNYQGGRRG
GGGGGGRNRGGGNRGGGSGGRGGRGGGGGGGEQRWWDPVWRAQRLAQKAAEYEVLDENEW
WNKMEGFYKGGDQELIIKHLFRREDQQILFDMAQQLGLHFHAYNKGKTLVASKVPLPNYR
ADLDERHGSTQKEIRMSTDIERRVGSLLDTSKGTSSTENSIGESSQSSKNSSSTISSVKP
VPILESHVAKEKISAELKHQEEKLKASASVQAMQSFRAKLPAFNVRSKFLEAVAKNQVLV
VSGETGCGKTTQLPQFILEEEISLLRGADCSIICTQPRRISAISVAARISSERGENLGET
VGYQIRLETKRSARTRLLFCTTGVLLRRLVQDPNLTGVSHLLVDEIHERGMYEDFLLIIL
KDLLPRRPDLRLILMSATINAELFSQYFGNAPSIHIPGLTFPVAEFFLEDVLEKTRYSIK
QESDSFQGSSRRRVKQLDSKKDPVTELFEDVDIDSHYRSYTINTRKSLEAWSSLQLDLSL
VQSTIEHICRHEGEGAILVFLTGWDEISKLLDSIKANHFLGDTRKFLVLPLHGSMPTVNQ
REIFDKPPASTRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISK
ASAHQRRGRAGRVQPGVCYRLYPKLVYDAMLQYQLPEILRTPLQELCLNIKSLQLGTVGS
FLAKALQPPDSLSVQNAIELLKTIGALDEREDLTPLGRHLCTLPLEPNIGKMLLMGSVFQ
CLNPALTIAAALAYRNPFVLPINRKEEADAAKKSFAGDSCSDHIALLKAFEGWKEAKSSR
TEKSFCWENFLSPVTMQMMDDMRKQFVDLLSDIGFVDKSKGPNAYNQYSHDMEMVCAILC
AGLYPNVVQCKRRGKRTAFYTKEVGQVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIR
DSTNISDYALLLFGGSLLPSKSGEGIEMLGGYLHFSASKSVLELMKKLRLELDKLLSRKI
EEPRLDITAEGKSVVAAVVELLHS
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcgctgcttcccattcccaactacaagtgttccaaccactttctctctcctc
aaacacttcacttcttcattccccttccccatttccaaacctcctcttctccatctctct
cctcgcctctttctctcatccatgtcttcccgccctaattaccaaggcggccgtcgcggc
ggtggtggaggaggtggacgtaatcgcggaggtggaaatcgtggcggaggtagcggcgga
agaggtggacgtggaggcggtggcggaggtggagagcagcgctggtgggacccggtgtgg
cgagctcagcgcctcgcgcagaaagcagcagagtacgaagtgttggatgagaacgagtgg
tggaataaaatggagggattttataaaggaggggatcaggagttgataatcaagcatctt
tttaggcgggaagatcaacaaattctcttcgacatggcccaacagcttgggcttcacttc
catgcatataacaaaggaaagacacttgttgcaagcaaagtccccttaccaaattatcgt
gcagatctagatgaacgtcatggatccacacagaaggagatacggatgtctacagacatt
gagagacgggttggttcattgttggatacctctaagggcacaagttctactgaaaattca
attggtgaatcgtcccaaagttcaaagaattcatcgtcaacaataagctctgtgaagcca
gtccctattttagagagtcatgttgcaaaagagaaaattagtgctgaactcaagcatcag
gaggagaagttgaaggcaagtgcaagtgtgcaagccatgcagtcattcagagcaaagctc
cctgcttttaatgtgagatctaaattcctagaagccgttgctaagaatcaggtccttgtc
gtgtcaggggagactggttgtggtaaaacaacccagctcccacaattcattttggaagag
gagatttcattgctgcgtggtgctgactgcagcataatatgtacccaaccacgtcgtata
tcagctatatctgttgctgctcgaatatcatctgaaagaggagaaaatcttggtgaaact
gttggctatcaaatacgcctggagacaaaacgttctgcacggacacggctactgttctgc
acgacaggagttttacttagacgattggttcaggatccaaatttaactggtgtaagccat
ctactagtggacgaaattcatgaaagaggaatgtatgaggacttccttcttattatacta
aaggatcttcttcctcgtcgtccagatttacgacttattcttatgagtgctactattaac
gctgagttgttttcccaatattttgggaatgccccctctattcacattccggggttgact
tttccagttgcagagttctttttggaagatgtgttggagaaaacccgatatagtatcaaa
caagagtctgatagtttccagggtagttcaaggcggcgagttaaacaattggattctaaa
aaggatcctgtaactgaattatttgaggatgtcgacatcgattcacattacaggagctac
accatcaatactagaaaatctcttgaagcctggtcttctttacagcttgatctgagtctt
gtgcaatcaacaatcgaacacatatgtcggcatgagggtgaaggggcaattcttgtattt
ctcactggctgggatgaaatttctaagttactcgacagcattaaggcgaaccattttctt
ggagacacaagaaagtttcttgtgctccctttgcatggttcaatgccaactgtcaatcaa
cgtgaaatttttgataaaccacctgcaagtacaaggaaaattgttctagcaacaaatatt
gcagagagtagtattactattgatgatgtagtctatgtcattgactgtggaaaggcaaag
gagactagctatgatgctttgaacaagctagcttgtttgttaccatcatggatctcaaaa
gcgtcagcacatcagagacgaggtcgtgctggtagagtgcagcctggagtttgttatagg
ctatatccaaaactggtttatgatgcaatgcttcagtatcagttaccagaaattcttcgg
acacctttgcaagaactttgtttaaacataaagagtttgcaacttggaactgttgggtca
ttcttagcaaaagcacttcagcctccggattctctctctgtccaaaatgctattgaactt
ctgaagacaattggggctttagatgaaagggaagaccttactcctcttggtcgacatctc
tgcactctgcctttggaaccaaatattgggaagatgttgctcatggggtcggtttttcaa
tgcctgaatccagcattgacaattgcagctgctcttgcttatcgtaatccatttgttttg
ccaatcaatcggaaggaggaagctgatgctgcaaagaaatcttttgctggcgattcttgc
agtgaccatatagcacttttaaaagcatttgaagggtggaaagaagcaaaatccagtagg
acagaaaagtcattttgttgggagaatttcttgtcacctgtaactatgcaaatgatggat
gatatgcggaaacaatttgtagatctactctcagatataggcttcgtggacaagtcaaag
ggtcctaatgcttataaccaatacagccatgatatggagatggtttgtgcgatcctttgt
gctgggctttatcccaatgttgttcaatgtaaaagaagaggaaaacgaacagcattttac
actaaagaagttgggcaagttgacattcatcctgcttcggtaaatgctggggttcatctt
tttccattgccgtatatggtttatagtgagaaggtgaagacaactagcatatacattcgt
gattcaaccaatatatccgattatgctcttcttctgttcggtggtagtcttcttcctagt
aaatctggagaaggcattgaaatgcttggaggttaccttcacttttcggcttcaaaaagt
gtgttggaattgatgaagaaattgcgactggagcttgataaacttttgagcaggaagatt
gaagaaccaaggctagacatcactgccgaggggaagagtgtggttgctgctgtagttgag
ttgttacacagttaa
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