Spinacia oleracea (spinach): 110794845
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Entry
110794845 CDS
T05137
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110794845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110794845
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110794845
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110794845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
AAA_19
nSTAND3
T2SSE
PWI
AAA_30
AAA_16
Motif
Other DBs
NCBI-GeneID:
110794845
NCBI-ProteinID:
XP_021855504
UniProt:
A0A9R0K1Z6
LinkDB
All DBs
Position
5:complement(1977462..1994554)
Genome browser
AA seq
1061 aa
AA seq
DB search
MGSEANLKSWVSDKLMTLLGYSQPTLVQYIIGLSKQASSPGDVVGKLVEYGLSSSTETRD
FAQEIYARVPRKDVGVNIYQKQEKEAAMLVRKQRTYQLLDEDDDDDLPVAENKSSATINY
DSKKPDARKKRFRKKSDKLEEEDDDDEVTIKREKHRQVKRKYSDADDDSESEEERVRDQR
EREELEIHLKERDAARTRKLTEVKLTKKEQEEAIRRSNALEQDDIDALRKVSRQEYLKKR
EEKKLVELRDEIEDEQYLFDGVKLTEAEQREMRYKKEILELVSKKRGEDASEINEYRMPD
AYDDVDGVVNQEKRFSVALHRYRDGGESGGKMNPFAEQEAWEEHQIGKATLKFGSKDKRQ
NADGYEYVFEDQIDFIKASVMDGDKFENEMPTESEESSKAKSALEKLQEDRKTLPVYPYR
EQLLDAVRDHQVLIIVGETGSGKTTQIPQYLHEGGYTKLGMIGCTQPRRVAAMSVAARVS
QEMGVKLGHEVGYSIRFEDCTSEKTFLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERT
LSTDILFGLVKDVARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVDIHYTKA
PEADYLDAAIVTALQIHVTEPSGDILIFLTGQEEIEAAEEILKHRTRGLGTKIAELIICP
IYANLPTDLQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGM
ESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNYYQDLEDNTVPEVQRTNLANVVLS
LKSLGIHDLLNFDFMDPPPSEALLKALELLYALGALNKLGELTKVGRRMAEFPLDPMLSK
MIVASEKHKCSEEIITIAAMLSIGNSIFYRPKDKQVHADTARMRFHEGNVGDHIALMKIY
NDWKACDYGSMWCFENYVQVRSMKRARDIRDQLEGLLERVEIEATSSLNDLEAIKKTITA
GFFPHTGKLQKNGSYRTIKHPQTVYLHPSSGLAQMEPQPRWVVYHELVLTTKEYMRQITE
LKPDWLIEIAPHYYQMKDVEDASTKKMPRGKGYSAATQGTA
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgggtagtgaagctaatttgaaatcatgggtttccgacaaattgatgacccttctcggt
tattctcaacccaccctagtgcaatacataattggtttgtctaagcaggcttcttcgcct
ggggatgttgtggggaagctagtggaatacgggctatcatcatcgactgaaactcgtgat
tttgcgcaagagatatatgcacgggttcctcgtaaagatgtgggagttaatatttatcag
aagcaagaaaaggaggcggctatgttggtgaggaaacagaggacttaccagcttttagat
gaggatgatgatgatgatttgcctgttgctgagaacaaatcttctgccaccattaattat
gactcaaagaagccagatgctcggaaaaaacggttcaggaagaaaagtgacaaactcgag
gaggaggatgatgatgatgaggtgacgataaagagagagaaacacagacaggtcaagagg
aaatattccgatgccgatgatgattccgagtcagaggaagaaagagtccgtgatcaaaga
gagagggaggagttggagatacatctcaaagagcgagatgctgctcgaacaaggaagcta
acagaggtaaaattgacgaagaaggagcaagaggaggcgattcgtagatctaatgctttg
gagcaagatgatattgatgcacttagaaaagtttctcgacaagaatatttgaagaaaagg
gaggaaaagaaattggtggagctcagagatgagatagaagatgaacaatacctatttgat
ggtgttaagcttactgaagcagagcaacgtgaaatgaggtacaagaaggaaatacttgag
cttgtctccaaaaagaggggagaagatgctagtgagataaacgagtatagaatgccggat
gcatatgatgatgtggatggtgtagtgaaccaagagaaaagattttcggtagctttacat
cgttatagagatggtggtgaatctgggggtaaaatgaacccatttgctgaacaagaagct
tgggaggagcaccagattggaaaagcaaccctaaaattcggttctaaagacaagcggcag
aatgcagatggctacgaatatgtctttgaagatcaaattgatttcataaaggcctctgta
atggatggggacaagtttgaaaatgagatgcctactgagtcagaggagtcctccaaagca
aagtctgctctggagaagcttcaggaggaccggaaaactttgccagtctatccataccgg
gagcaactactggatgctgttcgcgatcatcaggtccttataattgttggggagactggt
tctggaaagactactcaaataccccagtacctccatgaaggtggatatacaaaacttgga
atgattggatgtactcagccaaggagagttgctgctatgagtgttgctgctcgtgtttcc
caagaaatgggtgtgaaactggggcatgaggtgggttattccattcgatttgaagattgc
acatctgagaagacctttcttaagtatatgacagatggtatgctgctccgtgaatttctt
ggtgagcctgaccttgctagctacagtgttatcatggtggatgaagcgcacgagaggaca
ctctctacagacatattatttggtctggtcaaggatgtggctcgctttcggccggatttg
aagttactcatctcaagtgcaactcttgatgctgagaagttcagtgactattttgattct
gctccaatattcaaaattccagggaggcgttaccctgttgacatacactatacaaaggca
ccagaggctgattatttggatgcggccattgttaccgcattgcaaatacatgtcacggaa
ccatctggtgatattctaatatttctgactggacaagaagaaatagaagctgctgaagaa
atattgaagcataggactaggggccttggcacaaagattgctgaacttattatatgccca
atttatgccaacctaccaacagatttgcaagcgaagatatttgaacctactcctgaagga
gcacgtaaggttgtgttggccacaaatattgcagagacatctcttactattgatggaatt
aaatatgttatagatccgggattcgtcaagatgaagtcatataatccacgaacagggatg
gagtcattgctggtgacgcccatctccaaggcatcggcaaaccaacgcgcaggtcgatct
ggacgaaccggtcctggaaagtgttttagattatatactgcttacaattattaccaggat
ttggaggataatactgtccctgaagttcagcgaacaaatcttgcaaatgttgtgctttcc
ctcaaaagccttggaattcatgacttgttgaactttgatttcatggaccctccaccatct
gaggcattattaaaagctctcgagttgctttatgcgcttggtgctttgaacaagctaggc
gagctgactaaagttggtagaagaatggcggaatttccccttgatcccatgttatcgaag
atgattgttgcttctgagaagcataaatgttcagaggagataattacgattgcagcaatg
ctttctattggaaactcgatattttaccgccccaaggacaagcaagtccatgcagatact
gcaaggatgagattccatgaagggaatgttggagaccatatagcccttatgaagatttat
aacgattggaaagcatgtgattatggaagcatgtggtgctttgagaattatgttcaggtc
agaagcatgaaacgagcaagggatattagagaccaactcgagggactccttgagagggtc
gaaattgaagccacatcgagtctaaatgatttggaagcaataaaaaagactataacagca
ggtttcttccctcatacgggaaagctgcagaaaaatggatcttacaggacaattaagcat
cctcaaaccgtgtaccttcatcctagttcaggtttagcacagatggagccacaaccaagg
tgggttgtataccatgaactagttttgacaacaaaggaatatatgagacagataactgag
ctaaaaccggattggctgattgagatcgctcctcattattatcagatgaaggatgtcgaa
gatgctagcacgaagaaaatgccacggggtaaggggtattctgctgctactcagggaact
gcttga
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integrated database retrieval system
