Spinacia oleracea (spinach): 110794923
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Entry
110794923 CDS
T05137
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110794923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110794923
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110794923
Spliceosome [BR:
soe03041
]
Complex C
Other components
Step II factors
110794923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
PhoH
ABC_tran
DUF4468
AAA_23
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
110794923
NCBI-ProteinID:
XP_021855609
UniProt:
A0A9R0K233
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All DBs
Position
2:complement(113235211..113245336)
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AA seq
707 aa
AA seq
DB search
MPTMANSHFKQPNGTVSNNDSRRQKLLQQRKSLPIATVEKRLVEEIRNNHILIIVGETGS
GKTTQLPQYLFKAGFCHDGKLVGVTQPRRVAAVTVAKRVAEECGVQLGQRVGYSVRFDDM
TSGSTRIKYMTDGLLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLALLKSVQKARSQT
ANELVGRENSSNDANLEKGKEAQTTGPLKKGQGAKFPPLRLVIMSASLDAQIFSEYFGGA
KAVHVQGRQFPVDIFYTLHAETDYVEAAMVTIFQIHSEEAPGDILVFLTGQEEIESVEGL
VRDKLPQLPEGNRNIVTVPIYASLPSEQQMKAFMPAPAGFRKVILATNIAETSVTIPGIK
YVVDPGVVKARNYNPRTGIESLNVIPTSKAQALQRSGRAGREGAGKCFRLYTEREFEKLA
DSTVPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSRMAIVKSLEELFLLGALTEDYKL
SDPIGKQMARLPLDPIYSKALILSSQFNCLEEMLIAVAMLSVESIFFTPREKQEEARTAI
KRFSSTEGDHITLINVYRSCDEFLESGNANNSKDKIFKNMKKWCKDNFVNGRSLRHARDV
HSQIRRHVEQMGLRIASCGEDMILFRRCLAASFFLNAALRQPDGTYRALASSQIVQIHPT
SVLFRAKPDCIVFNELVRTNQNYIRDVTRIDPMWLTELAPHFYARQD
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaatggctaattcacacttcaaacaacccaacggcacagtttccaacaatgat
tccaggaggcaaaagcttttgcagcagagaaaatcccttcccattgctactgttgagaaa
cgattagtggaggagattcgcaataatcacattctgattattgttggtgaaactggaagt
ggcaagactactcagttaccccaatatttgttcaaagccggcttctgccacgatggaaaa
ttggttggagttactcaacctaggcgtgttgctgctgttactgtggcgaaaagagtggcg
gaggagtgtggtgtgcaattaggacaaagggttggatattcagttagatttgatgacatg
acttctggatcaactaggatcaagtacatgacagatgggctattattgagggaagcatta
ctggatccttatctatctaagtattcagttattgttgttgatgaagctcatgagagaact
gttcacactgatgtgttacttgccttgctgaaaagtgttcagaaagctagatctcagact
gcaaatgagttggttggtagagaaaactcaagtaatgacgcaaatttggagaaaggcaaa
gaagctcaaacgactggcccactcaagaaaggccagggtgcaaaatttcctcctctacgg
ctggtaattatgtctgccagcttagacgcacaaatattctccgagtactttggtggtgca
aaggctgttcatgttcagggaagacagttccctgttgatatattttatactctgcatgct
gagacagattatgttgaggcagcaatggtgacaatatttcagattcattcagaggaggct
cctggtgatatacttgtgtttttaactggtcaagaagagattgaatctgtagaagggctt
gtgagagacaaattgccacaattacctgaaggcaatcgaaatattgtaactgttcctatt
tatgcatctcttccctcagaacagcaaatgaaagctttcatgcctgccccagctggattt
cgtaaggtaatactggcaacaaacattgctgagacatcagtgacaataccgggaattaag
tatgttgtagaccctggagtggtgaaagcccggaactataatcctcgtacagggatagag
tcattaaacgttattcctacttcaaaagcacaagctcttcaaaggagtggacgtgcaggg
cgtgaaggagcaggaaaatgcttccgcctttatacagagagggaatttgagaaacttgcg
gactccacggtgccagaaataaagcgatgcaacctttcaaatgtcattttacaactcaaa
gctctaggagttgatgatattattggctttgacttcatggaaaaaccttcacgtatggca
attgtgaagtctctggaagaattgttcttgctcggcgctttaacagaggattataagctt
tcagatcctattggcaagcaaatggctagacttcctttagacccaatttattccaaggcc
cttattctgtctagccaattcaactgcttggaggaaatgctaatagccgtcgcaatgctc
tctgttgaatcaattttttttacaccacgtgaaaagcaagaagaggctaggactgcaatc
aagcgattttctagtactgaaggagaccacataaccctgattaacgtgtatagatcatgc
gatgagttcttggagagtggcaatgctaataacagcaaggacaaaattttcaagaatatg
aagaaatggtgcaaagataactttgtaaatggccgctcactcagacatgctcgtgatgta
cacagtcaaattagaagacatgtcgaacaaatgggccttcgtattgcttcatgtggagaa
gatatgattctatttcgcagatgccttgcagcttcctttttcctcaatgctgctttgaga
cagcctgatggtacatatagggctttggcaagcagtcagatagtgcaaatccacccaact
tctgtgttgtttcgggcaaagccagactgcatagtattcaatgaactggtcagaacgaac
cagaactacatccgtgatgttactagaattgatcctatgtggttgacagagttggctcct
catttctatgccagacaagattaa
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