Spinacia oleracea (spinach): 110795502
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Entry
110795502 CDS
T05137
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110795502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110795502
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110795502
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110795502
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
110795502
NCBI-ProteinID:
XP_021856208
UniProt:
A0A9R0K3B3
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Position
1:complement(47707790..47734171)
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AA seq
854 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAEMEGLSVKKGKTRPPRLTHLETSISRHKA
HVMKLELILRLLDNDELSAEHVNDVKDFLEDYLERNQEDFDEFSDVDELYNTLPLDKVEA
LEDLVSMGQPGLAKGGGVASSVLSLKTSSNTSSSVASATVPSSQLTIPIQEQDEINSMDS
NFDSVPKTPPSKTSILSSPNLSIPPTSQTAIANSSTHLPATPSATASVSGSVSGRGILEG
AVPSSPLNLPNVAKEEDAVNLPGRRSSPALTDPAALTRGIGRGSMSSQPAVSVPLSSVGT
VPSSGMTLGAVPLASEVAKRNILGSDDRLASSVVAGRAFSSSGVPGMQWRPGSSFQSQSE
VGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNILGMPSLAGGNSKPFSGQQQNPLLQQLS
SQSSSISSQVGLGLGLQSPGLSTASSAPVHQQAVQQGSLVVAPKDSDDGLAATEDQQQQN
LSEDSAVEMALGSGISKNLMNDDDLKASYVKDVSSGGASGPLTESTQLSRDADLSSGQTL
QSSQPSGSLGVIGRRSILDLGAIGDNIGGTTNSGGVHDLVYNTQMLEAAFYKLPQPKDSE
RAKSYTPRHPAATPPSYPQVQAPIVNNPAFWERLGLDTLGTDTLFFAFYYQPNTYQQYLA
AKELKKQSWRYHRKYYTWFQRHEEPKIATDEYEKGTYVYFDFHLANDDPHQGWCQRIKTD
FKFEYSFLEDELIV
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtcgaaagttacagggcgagatcgatcgagttttgaagaaggttcaagaa
ggtgttgacgttttcgatagcatctggaacaaggtctacgataccgataatgctaatcaa
aaagagaagtttgaagctgatttgaagaaggaaattaagaaattgcagaggtatagagac
caaatcaagacatggatacagtccagcgaaattaaggataaaaaggttagtgcatcttat
gagcaggctttggtggatgcccggaagcttattgagcgtgagatggaaaggtttaaaatt
tgcgagaaggaaacaaagacgaaagcattttcaaaagaaggtctaggccagcagcctaaa
actgaccctaaggagaaagcaaaatcagagacaagagattggttgaacaatgtggtagga
gagttagagtctcaaattgataattttgaggctgagatggagggcttatctgtgaagaaa
ggaaagacgagacctcctagactgacacatttggagacttctatatctcgtcacaaggct
catgtaatgaaattagaattgatattgagattactagacaatgatgaattgagtgctgaa
catgtcaatgatgttaaagacttccttgaagattatttggaacgtaatcaggaagatttt
gatgagtttagtgatgttgatgagctctacaacaccttaccattagacaaggtggaagct
cttgaagatctcgtgtcaatgggacaacctggacttgctaagggtggcggtgttgccagc
tcagttctaagtttaaagacatcatcaaatacgtcatcttctgtggcatcggcgactgtt
ccatcctctcaactaactattcctattcaggagcaagatgaaataaattctatggacagt
aattttgattctgttccaaaaactccgccgtctaagactagcatactcagttcccccaat
ctgtcaattccgccaacaagtcagacggctatagcaaactcttctactcatctacctgcc
actccaagtgctacagcttctgtttctgggtcagtttctggtagaggcattctggaaggt
gctgttccttcttctcctttgaatctcccaaatgttgccaaagaagaggatgcagtgaac
ttacctggccgaagatcatcacctgctctcacagaccctgcagctcttactcgaggcatt
ggccggggcagtatgtccagtcaacctgctgttagtgtccctcttagttctgttggtaca
gttcctagcagcggcatgacgcttggtgcagttcctctggcgtcagaggtagcgaagaga
aatattttaggatccgatgacagacttgcaagtagtgttgtcgccggtagagccttttct
tcttctggggttcctggaatgcagtggaggcctggaagctcttttcagagtcaaagtgaa
gtgggacagtttcgtggaagaactgaaattgctcctgatcaacgggaaaagtttcttcag
aggttgcagcaagtacagcagcaaggtcacagcaatattcttggaatgccaagtcttgca
ggtggaaattctaaacccttctcaggacagcagcaaaatccacttcttcagcagttaagt
tctcaaagctcgtctatctcctctcaagttggtcttggtctgggattgcagtctcctgga
ctaagcactgcttcatctgcacctgtccatcagcaggctgtccagcagggatctttagta
gttgctccaaaagattcagatgatggtcttgcagctaccgaggatcagcaacagcagaac
ttatctgaggattcggcagttgaaatggctcttggttctgggatttccaaaaatttgatg
aatgatgatgatcttaaagcttcttatgtgaaggatgtctcaagtggaggtgcatctggt
ccgctaacagaatccacgcaactgtcaagagatgcagatctttcttctggtcaaactttg
caatcaagtcaaccatctggtagccttggagttatcggtcggagaagtatcttagacctt
ggggccattggtgacaacattggcggaacaaccaactctgggggagtgcatgatcttgtg
tacaatacgcagatgcttgaggctgcattctacaagcttcctcagcctaaagattcagaa
cgagcaaagagctatacgcctagacaccctgcagcaactcctccaagctatccgcaagtt
caggcaccaattgtaaacaatcctgctttctgggaacgattgggtcttgataccttgggg
accgataccttgttctttgcattctactatcaaccaaatacatatcaacaatatttggct
gcaaaagagttaaagaaacaatcatggagataccatagaaaatattacacatggtttcag
aggcatgaagaaccaaagattgccactgatgaatacgagaaggggacctatgtctacttt
gattttcatcttgccaacgatgacccgcatcaaggatggtgccagaggattaaaacggac
ttcaaattcgagtatagttttttagaagacgaactaattgtatag
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