Spinacia oleracea (spinach): 110796172
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Entry
110796172 CDS
T05137
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110796172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110796172
03019 Messenger RNA biogenesis [BR:
soe03019
]
110796172
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110796172
RNA polymerase I system
110796172
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
110796172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW2_Spt5
KOW5_SPT5
KOW1_SPT5
KOW
KOW4_SPT5
KOW7_SPT5
Spt5_N
SH3_KIN17_C
MSSS
Motif
Other DBs
NCBI-GeneID:
110796172
NCBI-ProteinID:
XP_021856898
UniProt:
A0A9R0K3Z3
LinkDB
All DBs
Position
2:complement(110625865..110630080)
Genome browser
AA seq
454 aa
AA seq
DB search
MDVEAMEKMVNERYGSRSSLGYNDEDYEEDITELEQQTLLPSVRDPKLWLVKCLPGRERE
VAAFLMQKSLDKDSKSHILSAIALDHLKSYIYVESYCEAHVTQACKGMRYVFARNVTMVP
LKEMRNVLSVDPLDSKEIHVSRGDWVRLKRSNLKGELAKVVDVDTVKHKVIVKVTPKLSA
LSLSDKLEGVDYLYKTVALSSVTTEDIQPSIQEVENFRDIGDADVDLGSLFRGKEKGCWM
RGDAVVVMKGDLKNMKGFVEYVEGDIVHIRPNEKIPLPMKTVAVLGKDLAKYFEPGIQVK
VICGQMEGATGMVVKVDQNKLVILSDESKELITVFSAQVVESNETSENRTKSGIGYSNQD
KPQNSSASRPLPNPANSSGKLLPGNRPSSTLGRGTGYNWRRHDSFIGSNVKILHGPYKGY
RGCVKGVNGQNVRVELQAQMKVVTGKFTKIILDY
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgaagccatggaaaaaatggttaatgaaagatatggttctagaagttcattg
ggttataatgatgaagactatgaagaagacatcactgagcttgagcagcagactcttttg
ccatctgttagggacccgaaactatggttggttaaatgtttgcctggtcgcgagagggaa
gttgctgcattccttatgcagaaatcattggacaaagattcaaaatcacatattttatca
gctattgcccttgatcatttaaagagttacatctatgttgaatcatactgcgaggctcat
gtcacacaggcttgcaagggtatgcgttatgtctttgctcgtaatgtaacaatggtacct
ctgaaagaaatgaggaatgtcctctcagttgaccctcttgacagcaaagagatccatgtt
tctagaggagattgggttagactgaaacgatcaaatctcaaaggcgaacttgctaaggtt
gtagatgttgatacagtgaagcacaaagttattgtcaaagttactcctaagttgagcgct
ttatctctatcagataaactggaaggtgtagactacttgtataagacagtggctctgagt
tcggttactacagaagatatacagccaagtattcaggaagttgagaactttcgagatatt
ggagatgctgatgttgatttgggaagtttattcagagggaaagagaagggatgttggatg
aggggtgatgcagttgtggtgatgaagggtgatttaaagaatatgaaaggattcgttgag
tatgttgagggagatattgttcatatcagacctaatgagaagataccattaccaatgaaa
acggttgctgtgcttggaaaggacctagccaagtactttgaacccggcattcaggtgaag
gttatatgtggtcaaatggaaggtgcaaccggtatggttgtaaaggttgatcaaaacaag
cttgttattctatctgatgaatccaaagagcttattactgtattttctgcacaagttgtg
gaatcgaatgagacatcagaaaacagaaccaaatctgggattggttacagtaatcaggat
aaacctcaaaattcttcagcctcgaggcctttaccaaatcctgctaattcttccgggaaa
ttgcttcctggaaaccgtccttcatctactttggggcgagggacagggtataattggaga
agacatgattcattcattggtagtaatgtgaaaatactccatggtccttacaaagggtac
cgcggatgtgttaagggtgttaatggacagaatgtaagggttgagttacaggctcagatg
aaagtcgttacaggcaagtttaccaagattatactagactactag
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