Spinacia oleracea (spinach): 110796286
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Entry
110796286 CDS
T05137
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110796286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110796286
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110796286
mRNA degradation factors
5'-3' decay
Decapping complex
110796286
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110796286
NCBI-ProteinID:
XP_021857029
UniProt:
A0A9R0IZB4
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All DBs
Position
1:complement(103485111..103498856)
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AA seq
853 aa
AA seq
DB search
MMKPQHQPMMHQHQQSLFHPGLLAASQAVTDSRNQGISGGTSSGSFSTEDNSLFDASQYE
FFGQNVAEEIELGGLEDDQSDLSQLPLRTDEYHLFNKDEGQDVNLGSLSDVDDLETTFLK
LNRVVTGPRNPGVIGDRGSGSLSRESSAAADWSREGWLDHSVSDIDNALESKRWSSQPHC
LSNHPGEYKPLNRALSYPEQQLQQQQYLQQHFSNDGMSTHKSSFTSFPPPGDRAQQPLSH
RHSLPVNVSSLNSGPDLTLSASNLSHMSDSGLHFSGLSNAHGLQYGGSLSGLIPGHGITN
QTRSQWSSHAGLLHGDHSRILNNVLQQQFNHQNGLLHTSAFMSPRRQLQQGLRQSLPSLA
QFSLLQSQLIGGHPSMPPHYLKKYDSAYSVSETRDQRPKSMRGKHHRFSQQASESASQKN
DCIQFRSKYMTAEEIDSILKMQHTSHSNDPYIDDYYHQACAAKKSSSTRLKHHFAPLHLR
DLPSRVRNSGSDQHGHQSFDTLRRLALSSIRRPRPLLEIEPPSSGCSDGSTEHRTLEQEP
MFAARITVEDCFTLLLDIDDVDRFLQFSPPQDGGSQLRRKRQVLLEALAASLQLVDPLGS
GGHTVSPGDDIVFMRLVSLPKGWKLLAKYLELLTISPGPASELARIVCMAVFRHLRFLFG
GLPTDSGAAVATVDLAKAVSTCVSGMDLRGLSSCLAAVVCSSEQPPLRPLGSPTGDLATV
ILKSLLERATVLTNPNRQPPGSCNVPHYNFWKASFATFFSLLTKYCVSKYDTIMQSILNR
APSNTEYSRTEATRAIRREMPVELLRASLPHTDEIQRGMLMDFAHHSIPFPVTEFNLRDE
ENSGWISSESVRS
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagccgcagcaccaacctatgatgcatcaacatcaacagtctcttttccaccct
ggtcttcttgcagcttctcaggcggtgactgattccagaaatcaaggaatttctgggggt
acaagttctggatctttttctacagaagataattcactttttgatgcatctcaatatgaa
ttctttggtcaaaatgttgccgaggagattgagttggggggtcttgaagatgatcaaagt
gacctgtctcaacttccgttacgtactgatgaatatcatttgttcaataaagacgagggg
caggatgtcaatttagggtctttgtctgatgtggatgatctggaaaccacattcttgaag
ctgaatcgggttgtcacaggaccaaggaatcctggcgttattggtgatagaggatctgga
tctttgtcaagagaaagttcagctgcggcagactggtcaagagaaggctggttggaccat
agtgtgtcggatatagacaatgctttggaaagtaaaaggtggtcatctcaacctcattgc
ttgtccaatcatcctggggaatataaacccctgaacagagcactgtcttacccagagcag
caactacaacagcagcagtatcttcagcaacacttttcaaacgatggaatgtcaactcac
aaatcatcttttacctcttttcctcctcccggagacagagctcaacagcctttgtctcat
cgccattcacttcctgtaaatgtctcatctctgaattctggtcctgatctaactctctca
gcatcaaatctgtcacatatgtctgattctggtcttcatttttctgggctatctaatgcc
catggattacaatatggtggaagcttatcaggtcttatacctggtcatggaattactaac
cagacacgaagccagtggagcagccatgctggtttgttgcatggggatcattctaggatt
ctcaataatgtattgcaacagcagtttaatcatcaaaacgggttgcttcatacttcagct
tttatgtcaccgcggagacagcttcaacaaggacttcgccagtcactaccttccctagca
caattttcattgctgcagtcccagctcattggtggccatccatcaatgccccctcattat
ttaaaaaagtacgactcagcgtactctgtttccgagacgagggatcaaagacctaaatca
atgcgtggtaagcatcatcgatttagtcagcaagcttccgagtctgcaagccagaagaac
gattgtattcaattcagatccaagtatatgactgctgaggagatagatagtatactcaag
atgcagcatacttctcacagcaatgatccatatatagatgattattatcaccaagcttgt
gctgctaaaaaatcatcaagtacgaggctgaaacatcactttgctcctcttcatttgcgg
gacttgccttctcgtgtacgtaatagtggttctgatcagcatggccatcaatcctttgat
accttaagaaggctggccttgtcatccattcgtaggcctcgacctcttcttgaaattgaa
cccccatcctcaggatgcagtgatggcagtacagaacacaggacactggaacaagaacca
atgtttgctgctagaatcacagttgaggattgttttactcttcttcttgatatagatgat
gttgatcgttttctacaattcagtccacctcaagatggtgggtctcaacttaggcgtaaa
cgacaagttctgcttgaagctttagctgcatcccttcagcttgttgatcctcttggaagt
gggggccatacagtcagtccaggggatgatattgtgttcatgcgtcttgtctctcttccg
aagggttggaagcttctggctaagtaccttgagcttcttacaatcagccctggtcctgca
agtgaattagctcgaattgtttgcatggccgttttccgccatttaaggtttctgtttggt
ggtcttccaaccgactctggagctgctgtggctactgtagatcttgctaaggcagtttca
acttgtgtcagtggcatggatctccgtggtcttagttcatgtcttgctgccgttgtttgt
tcttcagagcagccgccactccgcccgcttggaagtcctacaggagatcttgctactgta
atcttgaagtccctacttgaaagagctactgttcttaccaaccctaaccgacaaccccct
ggcagctgtaatgtcccccattataacttctggaaagcctcttttgcaacattcttttct
ctgctcaccaagtactgtgttagtaagtatgacactataatgcaatctattttgaatcga
gcaccgtcaaatactgaatattcgcgtacagaagcaacaagggctatccgcagggagatg
cccgtggagctcctacgtgcaagtcttcctcacactgatgagattcaacgggggatgttg
atggattttgctcaccactctattccatttcctgttactgaattcaatctccgtgatgag
gaaaacagtggctggattagttcagaatcggtcaggagttag
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