Spinacia oleracea (spinach): 110796645
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Entry
110796645 CDS
T05137
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soe03036
]
110796645
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110796645
microRNA pathway
RISC loading complex
110796645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
Dicer_dimer
ResIII
PAZ
SWI2_SNF2
Cas3-like_C_2
SNF2-rel_dom
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110796645
NCBI-ProteinID:
XP_021857417
UniProt:
A0A9R0IYG9
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All DBs
Position
4:4227393..4241024
Genome browser
AA seq
1410 aa
AA seq
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MEPVNMEICEEQNNSSAELPFARSYQLEALEKAKKQNTIVFLETGSGKTLIAVMLLRSFA
HSLHRPAQSNIAVFLVPTVVLVTQQAEVIKMHTELKVGKYWGDMGVDFWDAATWQKELDE
HEVLVMTPKILLDALSHTYIKLDKIKVLIFDECHNARGNHPYARIMKDFYHRQMHTNDVP
RIFGMTASPIKAKVKGTSDSYGYWKDIQALENLMHSKVYTCVSEAILAEYIPFPSAKAQL
YTEDAPNALQMGLINSLDMLRAKHVSVVRNLDVEESAERSICSKLKKLSKTFQFCLNELG
LWAALKVAEIMSSEETDIFSWGELDVRGETTIKAFNSDVLKELSTHKPPGCNWSTSSMKA
ILDARIISSKVFCLVESLRRYRSLKDLRCIIFVERVVTAMVLETILDQLLSQTSGWRARY
IAGNQSALKSQSRKEQNKIVEEFRQGAVHILVATSILEEGLDVQSCNLVVRFDPSANICS
FIQSRGRARMQNSDFLLMVKKGDDSQLLRMNNYLSSGDVMRKESLSHATVPCQPVEFSEF
DEIFYRVPSTGAVVTLSSSVSLIYFYCSRLPSDGYFKPSPRCTIDEVSETCTLQFPNSCP
VQSVSVKGDKKMLKHLACLEACKKLHEKGALTDSLVPDIVVEERLMKGIEREIYDENQAK
YTPPELVGDGPRYASDTYHSYLMELKQDFYSDIPVHDVILVFKTELASDVGNMHFDMAVD
WGNMSVDIKYAGKINLSDEQVLLCSQYQAAVLRVLRDHNFDKLVESLKGLFEREKNDSMP
VSHHDYLILPRHWLHRSSLVSDLERITSASFLRDVVQGSFPNCNKRKCPQPKKKDEVYTK
NGFLHRSVLENCLVCTPHNGYIYSISGFLDGMDGNSLLSLSNGEVKTYKSYYKIRHGVDL
KFESQALLCGRQVFRLRNYLHRCKQKKEKESSGASVELPPELCLVIMSPISVATLYTFSF
IPSIMHRVESLLLSANLIAIITEHCTQNVFIPATKVLEAITTKRCQEKFHLESLETLGDS
FLKYAVCQQLFKTHQHNHEGLLSIKKDRIISNVALCRLGCQRKIPGFIRYDSFDPKNWII
PGDPGDSRLDKELISSTHKVYNGGVRKIKSKRVADVVEALIGAFLSSAGEIPALRFMNWL
GIEVEFSCILYQRNIPVNPRLLVNITRIESILNYSFKDPSLVVEALTHGSYMLPEIPRCY
QRLEFLGDAVLDHLITLYLYSKDPEMSPGLLTDLRSASVNNECYALSAIRAGLHKHILHA
SQILYKQMGAAVASFQNSSLESTFGWESETNYPKVLADIIESLAGAIFVDSGFDKQVVFN
SIRPLLEPLVTPETLKLNPVRELNHLCQTHHLTISKNRTSENGVASITLEVVEANGVVHK
HTCTASDRKMAKKIASKAILKSLKESSGKL
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagttaatatggagatttgcgaggaacaaaataactcatccgctgaacttcca
tttgctagaagctaccagcttgaggctttggagaaagccaagaagcagaacactattgtg
ttcttggaaactggttcgggaaagacattgattgctgtcatgcttcttcgcagttttgct
cactcccttcaccggcctgcacaatccaatattgccgtgttcttagtgcctactgttgtt
ctggttacgcaacaagcagaagttattaagatgcatacggaattaaaagtgggcaagtat
tggggagatatgggcgttgatttttgggatgctgctacttggcagaaagagcttgatgaa
catgaggtccttgtgatgacaccaaagatcttgcttgatgctttgagccatacttacatc
aaactggacaaaatcaaagttttaatatttgatgaatgccataatgcaagaggaaatcat
ccctatgctcgcataatgaaggacttctatcaccgtcaaatgcatactaatgacgtcccc
aggatatttggcatgacagcttctcctatcaaagcgaaagttaaaggtacgtctgactca
tatggttactggaaagatatccaagccctggaaaacctcatgcattcaaaggtctatacc
tgtgttagtgaggcaatcttggctgagtatattcctttcccaagtgcgaaggctcaactt
tacactgaagatgcaccaaatgcattgcagatgggtttgattaatagcttggacatgctg
agggcgaagcacgtatctgttgtcagaaatttggatgttgaagaatcggcagaacgatct
atatgtagcaagttaaaaaagctgtcaaaaacttttcagttttgtttgaatgagcttggt
ctttgggcagcattgaaggttgcagaaattatgtcttctgaagaaaccgacattttcagc
tggggtgaattggatgttcgtggtgagacgaccataaaagcattcaattctgacgtgctc
aaggagttatcaacccacaaaccgcctggctgcaattggtcaacttcaagtatgaaggct
attttggatgccaggattatatcttcaaaagtgttttgtctagtggaatctcttcgtcgt
tataggagtttaaaagatttgaggtgtataatattcgtcgaaagggtagttactgcaatg
gttcttgagactatcttggatcagctactttctcaaacaagtggctggagggcacgatac
attgccggaaatcaatctgcattaaagtcccaaagcaggaaggagcaaaataagattgtt
gaagagtttcgccaaggggctgtgcacattcttgttgctacctccattctagaagaaggg
ttagatgtccaaagctgcaacttggttgtccggtttgatccatcagccaacatttgcagt
tttattcagtcgagaggtcgtgctaggatgcaaaattccgatttcttgttgatggtgaaa
aagggagatgattctcagctgttacgcatgaacaactatctttcctctggtgatgtaatg
cggaaggaaagtttgagccatgctacggttccttgtcagcctgtagaatttagtgaattt
gatgagatcttctaccgtgttccgagcacaggagcagttgttacgctgagttctagtgtg
agcttgatatacttttattgctctcgtctaccttctgacgggtactttaaaccatctcct
cgctgcaccattgatgaggtttcagagacatgtacactacaatttccgaatagttgtcct
gtgcagtcagtttctgttaaaggcgataaaaaaatgctgaagcacctcgcttgcttggaa
gcatgcaagaagctgcatgagaaaggtgctttgacagatagtctcgttccggatattgtt
gtagaagagcgtcttatgaaaggcattgagcgtgaaatctatgatgagaaccaagcaaaa
tacaccccaccagaactagtcggcgatggcccaagatatgcatctgacacataccacagc
tacttaatggagctgaagcaagacttttactctgacatccctgtacacgatgttatttta
gttttcaaaactgagcttgcttccgatgttggaaacatgcattttgacatggcagttgac
tggggtaacatgtccgtggacataaagtatgcaggaaagatcaatctcagtgatgaacag
gtacttctttgtagccaataccaggcggctgtattgagggttcttagagatcacaatttt
gataagttagtggaatcattgaagggattatttgaacgggagaaaaatgatagtatgcct
gtttcacatcatgactatcttattctccctcgtcattggcttcatcgaagttcacttgtt
tctgatttggaacgtataacttccgcatcatttttacgtgacgttgttcaaggttcattc
cctaactgcaataagcgcaagtgtcctcagcctaaaaaaaaagatgaagtttacaccaag
aacgggtttttacatcgtagtgtgctggaaaactgtttggtgtgcacacctcataatggt
tacatctattctatctcgggttttttagatggtatggatggaaactcccttttgagtttg
agcaatggtgaagtaaaaacatacaagagttactacaaaattcgccatggggttgaccta
aaatttgaaagtcaagccctactttgtgggaggcaggttttccgactgcggaattacctc
cataggtgcaagcagaaaaaggagaaggagtcgagtggtgcttctgttgaactgcctcct
gaactctgtctcgtcatcatgtcgcccatttcagttgcgaccttatatacgttttcattt
attccttcgattatgcaccgagttgagtctctgctattgagtgccaacttgatagccatt
atcacggaacactgcacgcaaaatgtttttattcccgccaccaaggttctggaagcaatt
actaccaaacgctgccaggagaaatttcatctagaatccctagagaccctcggagattcg
tttttgaagtatgctgtttgccaacagctgtttaagactcatcaacacaatcacgaggga
ctccttagtataaaaaaagatagaattatttccaacgttgccctttgcaggctagggtgc
caacgcaagattccgggtttcatacgctatgattccttcgatcctaagaattggatcatc
cccggggatcccggagactccagactggataaagagctaattagtagcactcataaggtc
tacaatggcggagttagaaaaatcaagagcaagagagttgccgatgttgttgaagcacta
attggtgcatttcttagctctgctggagaaataccggcattgaggttcatgaactggctt
ggcatagaggtggagttttcgtgtattctgtatcagaggaacatccctgtaaatccccgt
ttgctcgtaaacataacacgtattgagtccattttgaattactcgttcaaggatccgtct
ctggtagttgaagcacttacccacggttcatatatgttacccgaaatccctcgatgctat
caacgtttggaatttctgggagatgcggtgttggatcatctgatcacattatacctttac
tcaaaagatcccgagatgtctcctggtctgttgactgatctgagatcagcctcggttaat
aacgaatgttatgctctatctgctattcgcgctggacttcacaagcatatactccatgct
tcacagatcctgtacaagcagatgggtgctgctgttgcaagttttcagaattcatcttta
gagtcgacattcggttgggaatcagaaacaaattatcccaaggttttggcagacataata
gaatccttagccggggcaatcttcgtcgattctggattcgacaaacaagtcgtattcaac
agtatacgacctctcttggaacccctcgttacaccagaaacactgaagctaaacccggta
cgagagctgaatcatttgtgtcaaacacatcatctgactataagtaagaacagaacttcc
gagaacggtgttgcttcgatcacactcgaggtcgtcgaggcaaacggggttgtacacaaa
catacgtgcactgcttctgatagaaagatggccaagaaaatcgcttctaaagctattctc
aagtcgttgaaagaaagttccggaaaattgtga
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