Spinacia oleracea (spinach): 110797073
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Entry
110797073 CDS
T05137
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03022
Basal transcription factors
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110797073
09124 Replication and repair
03420 Nucleotide excision repair
110797073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110797073
03400 DNA repair and recombination proteins [BR:
soe03400
]
110797073
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110797073
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110797073
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110797073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
Helicase_C_3
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110797073
NCBI-ProteinID:
XP_056697137
LinkDB
All DBs
Position
3:complement(7549505..7554737)
Genome browser
AA seq
643 aa
AA seq
DB search
MQSSKALNDATNSTETQQHHRRIKKLKSSNCDFDFPKSYLANNNIIVYAEPESKTDFTNM
TLKPDYDNRPLWTCPNGRIVLETCSKYYEQASDFLITVAEPVCRQEYMHEYKLTVQSLNT
AVSVVGIGIEKILNILTILSKNILPKELIDRVENMKLSDPKMLEEYDFLNDTSCPDINML
LKPNVELRPYQKMSLCRMFGNGKARSGIIVLPCGAGKSLVGVSAACHIKKNCLCLATNAV
SVDQWASQFKLWSTIRDDDISCFTSDSKERLPDNVGVVVTTYNMLAFSGKRSEQSEMIME
QIRNTEWGLVLMDEVHVVPADMFRKVISITKSHCKLGLTATLVREDDRISDLNFLIGPKL
YEANWLDLVKAGYIANVQCAEVRCPMTKEFFAEYLKQKVSQKKQALYVMNPNKFKACEFL
IRYHERERGDKIIVFADSLFALEEYAKKLGKPMIHGGTSHFERTKVLEDFKTSKNGNTIF
LSKVGDNSIDIPEANVIIQISSHGGSRRQEAQRLGRILRAKGCLEDRLTGGKEEYNAFFY
SLVSTNTREMYYSTKRQQFLVDQGYNFKVIKSLPLDYGAEVSDHAQEMNLLYRVLRAKDE
MFEDEVSQDGLQQYSTGHKRPAHVKTNPKHPPKRHHLFKNRKF
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcttcaaaggctttaaacgatgccacaaatagcacggaaacccaacaacaccat
aggagaatcaagaagctgaaatcatcaaattgcgacttcgacttccctaaatcatacctc
gccaacaacaacattatagtctacgctgagcctgagtctaagactgacttcaccaatatg
acactcaagcctgattatgataaccgtccgctctggacttgtccgaacggcagaattgtg
ctggaaacttgctcgaaatattatgaacaagctagtgacttcttgatcacggttgctgaa
ccagtttgcaggcaagaatacatgcacgaatacaaattaaccgtgcagtcattaaacact
gctgtttctgttgttggtattgggatagaaaagatcctaaacatcctcactatcttgtca
aagaacattcttcctaaagaattaattgatagggttgaaaatatgaagctgtcagatcca
aaaatgttggaggaatatgattttcttaatgacacaagttgtcctgatatcaacatgctg
ttgaagcctaatgtagaactgcgaccataccagaaaatgagtctctgtagaatgtttggg
aatggtaaagctagatctggcattattgtgttaccttgtggggctggaaagtctcttgtt
ggtgtatctgcagcatgccatataaagaagaactgcctttgtctggccacaaatgctgtc
tcagtggatcaatgggcatctcagttcaaactttggtccactattagagacgatgacata
tcttgtttcacttctgatagcaaagagagattacctgataatgttggagtagttgtgaca
acatacaacatgcttgcttttagtggtaaacgttctgaacaatctgagatgatcatggaa
caaataagaaatacagaatggggattagttctcatggatgaggtacacgttgttcctgct
gacatgtttcggaaagtcatcagcattacaaaatcgcattgcaaactcggtcttactgct
acccttgtgagagaggatgatcgaatctctgatctaaacttccttattggccccaaactg
tacgaagccaactggttggatttggtaaaggctggctacattgcaaatgtacagtgtgct
gaagttaggtgtccgatgactaaggagttttttgccgaatatttgaagcaaaaagtttcc
cagaaaaagcaggcattatatgtgatgaatcccaacaagttcaaagcatgtgaattctta
attcggtatcatgagcgggagcgtggtgacaaaataatagtttttgctgatagccttttt
gctctcgaggagtatgcaaagaagctcgggaagcctatgattcatggtggtaccagtcat
tttgagaggactaaagttctagaggacttcaagacttctaagaatgggaacacaatattt
ctttctaaggtgggtgataactcgatagatatacctgaagcaaatgtgatcattcaaatt
tcatcccatggtggttcaaggcgtcaagaagctcaacgtcttggccgtattctcagggca
aagggttgtcttgaagataggctgaccggaggaaaggaagagtataatgccttcttttat
tcacttgtatccactaatacacgggagatgtattactctactaaaaggcagcagtttttg
gttgaccaaggttacaactttaaggtaataaaaagcttgcctcttgattatggagcagaa
gtcagcgaccatgcacaagagatgaatctcctgtatagggtactaagagcaaaggatgag
atgtttgaagatgaggtatcacaggatggtttacagcaatacagcactggacataagagg
cctgcgcatgtgaagaccaaccccaaacatccacccaaacggcatcatcttttcaagaat
agaaagttttga
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