Spinacia oleracea (spinach): 110797168
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Entry
110797168 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110797168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110797168
03012 Translation factors [BR:
soe03012
]
110797168
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110797168
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110797168
Translation factors [BR:
soe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110797168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_16
Dicer_dimer
DUF3179
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
110797168
NCBI-ProteinID:
XP_021857954
UniProt:
A0A9R0IYM8
LinkDB
All DBs
Position
5:20757090..20774901
Genome browser
AA seq
1178 aa
AA seq
DB search
MPCSSPFFHGYLRTTSQLAMSLKPSTNFCTISPRPFSVLQFGKHKSFKTLAFRPLQWRPI
ACRVAAVGASRRPFDLLQSPNLYQQSKEFGRFAYDDYPDDDSDRENDSAQQKQSSTLDNI
DEWRWKFTTLLRNKAEVEVVSRERKDRRDFEQLSAVATRMGLYSRQYSKVVVFSKVPLAN
YRHDLDDKRPQREVILGFNLQKDVDILLKRHLHEKSVSKQTLQNYSMSSNTFGRGKKEYS
QPEPTAQMISAKEKMLREISLRLRVQQQQWQDSPEGQKMLELRRSLPAYKERDALLKAIS
ENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSLICTQPRRISAMSVSERVAAERG
EQLGESVGYKIRLEGIKGKDTRLLFCTTGILLRRLLVDRDLRGVTHVIVDEIHERGMNED
FLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTLHIPGFTYPVRAHFLENILET
TGYRLTSYNQIDDYGQEKVWKMQKQAQRKKKTQIASTVEDTLEAANFNRYSHWTRDSLSC
WNPDSIGFNLIEHVLSHICKNERPGAVLVFMTGWEDINSLKDQLQSHPVLGDPSRVLLLA
CHGSMASSEQRLIFDRPPEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPSWISKAAARQRRGRAGRVQSGECYHLYPKCVYDAFSDYQIPELLRTPLQSLCLQI
KSLDLGGVSEFLSKALQPPEPLSVQNAIDFLKVIGALDENENLTVLGQNLSVLPVEPKLG
KMLILGAIFKCLDPVMTVVAGLSGRDPFMTPFDKKDLAESAKAQFSGREFSDHLTLIRAY
EGWKHAERQQSGYEYCWTNFLSSQTLRAIDSLRKQFFSLLKDTGLVDTDNESRNKWSHDE
HLVRAIICAGMFPGVCSVGNKERSITLKTMEDGQVLLYSNSVNAQEPKIPYPWLVFNEKI
KVNSVFLRDSTAVSDSVLLLFGGNISRGRQDGHLKMLGGYLEFFMKPGLADIYLSLKREL
EELIHCKLVDPKLDIHRFVDLLSATRLLISEDQREGRFVYGRQLPTPSKKAGKETSVQGG
KISGDDNSKNQLQTLLARAGHEAPAYRTRPLNNKFRATVNFNGLEFVGKPCNNKKLAEKD
AAAEAVKWLMGDTPSFRGDIDHLSMFMKNSKKKHGKGT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccctgctcttctcccttcttccatggctatctccgcacaacttcacaactcgccatg
tctcttaaaccctctacaaacttctgcaccatttctcccagacctttctctgtccttcaa
ttcgggaaacacaagtccttcaaaaccctagctttcaggcctcttcaatggcgcccgatt
gcttgtagggtggctgctgttggggcctccagaagaccatttgatttgttacaatcaccc
aatttgtatcagcagagcaaggaattcgggaggtttgcttatgatgattatcccgacgat
gactccgaccgagaaaatgattccgcacagcaaaaacaatcttcaacacttgataatata
gatgagtggagatggaaatttacaacacttcttcgaaacaaagctgaagtagaagtggtg
tctagagagagaaaggacaggcgtgactttgagcaactttctgcagtggcaaccagaatg
ggtttgtacagccgtcaatattccaaagtggttgtatttagtaaagttcccttggcaaat
tatcgccatgacctggatgataagcggccacaacgggaggttatactgggttttaatctg
caaaaggatgtagatattcttctcaagaggcaccttcatgaaaaatccgtgagtaagcag
actcttcaaaattattccatgtcaagtaatacttttggtcggggtaagaaggaatacagc
cagcctgaacccacggcgcagatgatttctgcgaaagagaaaatgcttagggagattagt
ttgcgacttcgggttcaacaacaacaatggcaggattcaccggaaggtcagaagatgcta
gaacttcgaagaagtctacctgcatacaaggagagggatgctctattgaaggccatctca
gaaaaccaggtagtggttgtctctggtgaaacgggttgtggtaagacaactcaacttccc
cagtacattttagagtctgaaattgaagcagctcgtggagctagttgtagccttatatgt
acgcagccgagaagaatatcagctatgtctgtttcagagagggttgctgccgaacgaggg
gaacaacttggagaatcagttggctacaaaattagattggaagggattaaaggaaaggat
acacgacttctcttctgcactactggtatactgttgaggagactgcttgttgatagagat
ttaaggggtgtgacccatgtcattgttgatgaaattcatgaacgtggcatgaatgaagat
tttctcctgattgtcttgaaagatctcctacctcgtcgaccagatttgaggctgattttg
atgagcgcaactcttaatgctgagctattttcctcttactttggtggagctcctacgcta
catattcctggtttcacataccccgttcgagctcactttctggagaatatcttggaaaca
actggatataggctgacctcctataatcagattgatgattatggtcaagaaaaggtatgg
aaaatgcagaaacaagctcagaggaagaaaaagacacaaattgcttcaacagttgaggat
acactagaagctgctaattttaatcggtatagtcattggactcgagattcattgtcctgc
tggaaccctgattctattggttttaatctcattgagcatgtgttatcccatatatgtaag
aatgaaagacctggtgcagttttagtatttatgactggttgggaggatattaattctttg
aaggaccagcttcaatctcatcctgtacttggagatccgagcagggttttgttgcttgct
tgccatggttccatggctagttccgaacagaggctgatatttgataggcctccagaaggg
gtgcggaaaatagtacttgccacaaatatggcagagactagtatcaccataaatgatgtg
gtctttgttgttgattgtggtaaggcaaaagagacatcatatgatgcactgaacaacact
ccctgtctgctaccttcgtggatctcaaaagctgctgctcggcagagaagaggtagagct
ggtcgtgttcagtcaggggagtgttaccatctttaccccaaatgtgtctacgatgcattc
agtgattatcagataccagaacttttgaggacacccctacagtccctctgtcttcagatt
aaaagcttagaccttggtggtgtttcagagtttctgtcaaaagctttgcaaccaccagag
ccattatcggtacaaaatgctattgattttttgaaggtcattggagctctggatgaaaat
gaaaatcttactgtgctcggtcaaaacttgtctgtgcttcctgtggagcccaaactaggg
aagatgctaatattgggggctattttcaaatgcctagacccggtaatgactgttgttgct
ggtttaagtggtagagaccccttcatgacgccatttgacaagaaggatctcgcagagtca
gcaaaggctcagttctctggtcgtgagttcagtgaccatcttacccttattcgagcttat
gaaggatggaaacatgctgaaagacaacagtctggttatgaatattgttggacaaatttt
ttgtcctcccagactttgagagctattgattccttgcggaagcagtttttctcgttactc
aaagatacaggacttgttgataccgataatgaaagccgtaacaagtggagccatgatgag
caccttgttcgggcaataatttgtgcgggtatgttccctggtgtttgctcagttgggaat
aaagagaggtcaataacgctgaaaacaatggaagatggacaagttcttctgtattcgaat
tcagtgaatgcacaagaaccaaaaataccatatccatggcttgtcttcaatgagaagata
aaggtcaattctgtcttcctgagggattcaacggccgtgtcagattctgtgttgttactg
tttggaggaaacatttctaggggtagacaggatggacacttgaaaatgctgggaggatac
ctggagttctttatgaaacctggcttagcagacatctacctgtccttgaaaagagaactt
gaggaactaattcattgcaagcttgtggatcccaagttggacatccacagattcgtggac
cttttatctgcaacaagattgctgatatcagaagaccaacgtgagggtagatttgtgtac
ggtcgtcaactgccaacaccatcaaaaaaggcaggtaaagagacaagtgtgcagggtggt
aaaatcagtggtgatgataattccaagaaccaattgcaaactttgcttgcaagggcaggg
catgaagcacctgcgtacaggacaagaccactgaacaacaagtttcgtgctactgtaaat
ttcaacggcttggaatttgttggtaaaccttgtaacaataagaagctagcagaaaaggat
gctgctgcagaagctgttaaatggttgatgggtgataccccttcattccggggagatata
gaccatttgtcaatgttcatgaaaaacagcaagaagaaacatggtaaaggaacgtag
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