Spinacia oleracea (spinach): 110797541
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Entry
110797541 CDS
T05137
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03013
Nucleocytoplasmic transport
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110797541
03015 mRNA surveillance pathway
110797541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110797541
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110797541
mRNA cycle factors
P-body specific factors
110797541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Xpo1
DUF1033
Motif
Other DBs
NCBI-GeneID:
110797541
NCBI-ProteinID:
XP_021858355
UniProt:
A0A9R0K4N5
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Position
1:complement(116252520..116267510)
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AA seq
1158 aa
AA seq
DB search
MSLRQSNLKPERPDPVFLRTLDSSIKRNTAVIKKLKQISEDQREGLMDDLRGVNLSKFVT
EAVAAICDAKLKTSDIQAAVQICSFLHQRYLDFSSSLTQGLSKVLFSGKATEDLETDKNS
KAMKKRSSLKLLLELYFVGVIEDSSVFVNIIKDLTSLEHLKDRDATQTNLSLLATFARQG
RVFLGLPLSGPEADEEFFKSLNVTADQKKIFKKAFHVYYDAVAEVLHAEHASLRQMEHEN
AKILNAKGELSDDNASLYEKLRKSYDHLYRGVTSLAEALDMQPPVMHEDGHTTRVTSGDD
SSSAAGKESSAVEAVWDDEDTRSFYECLPDLRAFVPAVLLGDADSKASEQHAKTQDQSSD
AASEHDQGHPAAEDTVESSVDSPTLQDGKIIDKGKDKEGKGKDREEKEKNKEVDKERGKD
KDADKKGDKEKEKHKGLEGTNLETLVQRLPGSVSRDLIDQLTVEFCYLNSKTNRKKLVRA
LFNVPRTSLELLPYYSRMVATLSTCMKDISSMLLQMLEEEFNFLINKKDQMNIETKVRNI
RFIGELCKFKIAPAGLVFSCLKACLDEFTHHNIDVACNLLETCGRFLYRSPETTIRMANM
LEILMRLKNVKNLDPRHSTLVENAYYLCKPPERPARITKVRPPLHQYIRKMLFSDLDKSS
IEHVLRQLRKLPWSECEPYLLKCFLKVHRGKYGQIHLIASLTAGLNRYHDDFAVAVVDEV
LEEIRLGLELNDFTMQQRRLAHMRFLGELYNYEHVDSSVIFETLYLILVFGHGTAEQDVL
DPPEDCFRIRMVITLLETCGHYFDRGSSRRKLDRFLIHFQRYTLGKGVLPLDIEFDLQDL
FADLRPNMSRHTSIEEVNDALAELEEHEGKVSSERHSENEKRSSSISRNNLVNGQGLANG
VDENGGAHEDIIGDSETDSDSGSIGAGGHDDDDDMYDENHDAGSEVEDDDDDVGPASDED
GEIHVRQKASARVQKEESEFDRELKALMQESLESRKLELRSRPTLDMMIPMSILEGSSKD
HHGKGIEGESGEDTLEEENGGNREVRVKVLVKRGHKQQTRQMSIPQDCSLVRSTKQKEAA
ELEEKQDIKRLVLEYNDREEEELNGVGVGNQIMGWTQSGIGRIPGRGSAWEGSGGRGSGS
RHRYHHHSGGGHFYSRRR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccgtcaaagtaacttgaagcctgaaagacctgatcctgttttcttgaggacg
ctggattccagcatcaaacgtaacactgcagttattaaaaagcttaaacagataagtgaa
gatcaacgagaaggcttgatggatgatttgcgaggtgtcaacctgagtaaattcgtgact
gaggcagtggcagctatatgtgatgcgaagctaaaaacttcagacattcaggctgctgtt
cagatttgttcatttcttcaccaaagatacctggatttctcatcgagcctgacccagggg
ttatcaaaagtgttattttctgggaaagcaacagaagacctggagacagataaaaactca
aaagccatgaagaagcgcagctccttaaagctccttttggaattgtactttgttggggtc
atagaagatagtagtgtttttgtcaacatcatcaaagatcttacgagtttggaacaccta
aaggaccgagatgctactcagactaatctgtctctgcttgctacatttgcacgtcaagga
agagttttcctgggccttccactttctggaccagaagctgatgaagagtttttcaaaagc
cttaatgtcactgctgatcagaagaaaatcttcaagaaggcgtttcatgtgtattatgat
gctgttgctgaagtcctacatgctgagcatgcttctcttcgccagatggagcatgagaat
gcaaaaattttgaatgcgaaaggggagctaagtgatgataatgcatcattatacgagaag
ttgcgaaaatcttatgaccatttgtaccggggtgtcacatctttagctgaagcccttgat
atgcaacctccagtgatgcatgaggatggtcatactaccagggtaactagtggggatgat
tcttcttctgctgctggaaaggaatcttctgctgttgaagctgtgtgggatgatgaagat
acaagatctttctatgagtgcttacccgatcttagagcatttgttccagccgttttactg
ggggatgctgattccaaggccagtgagcaacatgcaaagacgcaagaccaatcatctgat
gctgcctcagaacatgatcagggtcacccagctgcggaggatactgttgagtcctctgtt
gactctccaactttgcaggatggtaaaataattgacaaaggaaaggataaagaaggaaag
ggaaaagatagagaggagaaagagaagaataaagaagttgacaaagagagaggaaaagat
aaagatgcagataagaaaggagataaagaaaaggaaaaacataaaggtctcgagggtacc
aatctggaaactttggtgcagcgcctcccaggttctgtcagccgtgatcttattgatcag
ttaactgtagaattttgctatttgaactcaaagactaatcgaaaaaagcttgtgagggca
ttattcaatgttcccagaacctccttagagttgcttccatactactctcgcatggttgcc
acattgtctacttgtatgaaggatatctcttcaatgcttcttcagatgttggaagaggag
ttcaacttcttgataaacaagaaggatcaaatgaacattgaaacaaaggtcaggaatatc
cggtttattggggaactgtgcaaatttaagattgccccagctggccttgtatttagctgc
ttaaaggcttgcttggatgaatttacccatcataatatagacgtggcttgcaatcttctg
gagacatgtgggcggttcttatatcgttctcctgaaaccacaatacgcatggctaatatg
ttggagatacttatgcggctgaaaaatgtgaagaatctggaccctcgtcatagcactctt
gttgaaaatgcatattatctctgcaaacctcctgagagacctgccagaatcactaaagtc
cgccctcccttgcatcagtacattaggaaaatgctcttctcagatctggacaaatcctcc
attgagcatgtgcttagacaacttcggaaattgccatggagtgaatgtgagccatatctg
ctgaaatgctttttgaaggttcatcgcggaaaatatgggcaaattcaccttattgcatca
ctgacagctggactcaaccgttaccatgatgattttgctgttgctgttgttgatgaggtt
ttggaagaaatcagactggggctagagttgaatgacttcactatgcagcaacgacggctt
gcacacatgcgtttcttaggggagctgtataactatgagcatgtggactcatctgttatc
tttgagacgctatacttgattcttgtttttggccatggcactgctgagcaagatgtcctg
gatcctcccgaggattgtttccgtattaggatggttattacacttcttgagacctgcgga
cactactttgaccgaggttcatccagaaggaaacttgatcgatttttgatacatttccaa
agatataccctgggcaagggtgttttaccgcttgatatcgagttcgacttacaggatctc
tttgctgatctgcggccaaatatgtctcgccatacctccattgaagaagtcaatgatgcc
cttgcggaactggaggagcatgaaggtaaagtcagtagtgaaagacattcagagaatgag
aagcgttcaagcagtatctctcgaaataatcttgttaatggtcaaggccttgcaaatggt
gttgatgaaaatgggggtgcacacgaggatataataggggatagtgaaacggactcggac
agtggctcaataggtgctgggggtcatgatgacgatgatgacatgtatgatgagaatcat
gatgcagggagtgaggttgaggatgatgatgatgatgtagggcctgcttctgatgaagat
ggtgaaattcatgtcaggcagaaggcatctgcccgggttcagaaggaagaatctgagttt
gacagggagctcaaagctcttatgcaggagagcttagaatctcgtaagctggaactgcga
tcccgcccaacacttgacatgatgataccaatgagcattttggaaggttcttctaaggat
catcatggaaaagggattgaaggggagagcggggaagacacattggaggaagagaatgga
ggaaaccgagaggtgcgtgtaaaagttcttgtgaaacgaggacacaagcaacagacaagg
caaatgtcgattcctcaagattgttctctagtgaggagtacgaagcagaaagaagctgct
gagcttgaagagaagcaggacataaagcgattagttctggagtacaatgatagagaagaa
gaggagcttaatggggttggggttggtaaccaaataatgggttggacacaatctgggata
ggccgaatacctggtcgtggtagcgcttgggaaggaagtggtggtagaggttctggctca
cgtcataggtaccaccatcattctggtggtggacatttttatagtcgaagaagatga
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