Spinacia oleracea (spinach): 110798074
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Entry
110798074 CDS
T05137
Name
(RefSeq) uncharacterized protein LOC110798074
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110798074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110798074
03019 Messenger RNA biogenesis [BR:
soe03019
]
110798074
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110798074
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110798074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
110798074
NCBI-ProteinID:
XP_021858901
UniProt:
A0A9R0J0T8
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All DBs
Position
4:88028049..88038239
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AA seq
564 aa
AA seq
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MRPFAQHLTNPLTSHAPGASAPQQAVGSASNMLPNLMQIQSQMGFTNFNPSMGNAQMPPG
FMNVPNFNALQNGHPGGGSIMGSVQHNSGFSPNNFGQNLNVLGFPINGQLSNLGQGNQTP
QLFGHNPLSNGQFGWQNQLQNMNQLGNMPMLNPSQVNALTQLLGCANQVAQAMNSQNAAF
LGNPQLGFGQPNGGLQQGGFSQQLPVAPQQLQNVSVLPSNPAASSHPQCQPSNLQSNHGQ
KQGMQFPNSSHHQNKNFVNHKREASNWRVQKSQDRQMHNPKGKQKFSNINEGKGITNDDP
DNSANQPQGGKRRSLAMLYTEKEIQQWREERKKNFPSKGNVEKKQAQKQANTDAADEDAK
LRRQQLKDVLAKQVELGFEVPEIPSHYLSDTEQQAHGRDKSRRPLNKGRFPNNGRSQNRF
SRGGKFDNKDRFSTKRDTEYDGSFRKHERFTKRQRTEDDNAPKTPLIVKEPTLLQKLLST
DIKKDQSRLLQAFRFIVINSFFKDWPEKPLDFPKVIVKEIGVESDVIQEKSSIKAELSND
EEGDTSAVKDGENDDPQEEGEITD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcgccctttcgctcagcatctcactaacccgcttacttctcatgctcctggagcttct
gctccacaacaggctgttggaagtgcgagtaatatgttgcctaatctaatgcaaattcaa
tcgcaaatgggttttactaattttaacccaagtatgggtaatgctcaaatgccccctggt
tttatgaatgttcccaatttcaatgctttgcaaaacggtcatccgggtggcggctcaatt
atgggttcagttcaacataattctgggttttctccaaataattttgggcagaatttgaat
gttttgggttttccaattaacgggcaattgagtaatttgggtcaaggaaatcaaactcct
cagttatttgggcataatcccttaagtaatggccagtttggctggcagaaccaattgcaa
aatatgaatcaacttgggaatatgccaatgttgaatccctctcaagttaatgccttgact
cagttattgggttgtgctaaccaagttgcccaggcaatgaattcgcaaaacgccgcattt
cttgggaacccacagcttggttttggccaacctaatggtggtctacagcagggtggcttc
agtcaacagctgcctgtagctcctcagcagctgcagaatgtttctgttctgccttcaaat
cccgctgcttcgtctcatcctcaatgccagccctcaaatttgcagagtaatcatggtcaa
aaacaaggaatgcagtttccaaactccagccaccatcaaaataagaattttgtgaatcat
aaaagagaagcatctaactggagagttcaaaagtctcaagatcgtcagatgcataatcca
aaagggaaacagaagttttctaacatcaacgaaggaaaaggcattacaaatgatgatcct
gataattctgcaaaccaaccgcaaggtggaaaacgaaggtcactcgctatgctctacact
gagaaagaaattcagcagtggcgtgaagaacgcaagaaaaattttccatctaaaggcaat
gtggaaaagaagcaggcacaaaagcaagcaaacactgatgctgcagatgaagatgccaag
ttacgacgtcagcaattaaaggatgtactggcgaagcaagttgagttgggttttgaagtt
ccggaaatcccatcccactatctgtcagatacagagcaacaggctcatgggagggacaaa
tctagaaggccattgaacaaggggcgcttcccaaataatgggcgatcccagaataggttc
agtagaggtggaaagtttgacaacaaagataggttttctacgaaaagggacacagaatat
gatggttcattcaggaaacatgaacgattcacaaaaagacaaaggacggaggacgataat
gcaccaaagacccctttgatagttaaggaaccaacacttctgcaaaagcttttgagtacc
gatataaagaaagaccagagccgtctattgcaggcttttcgttttatagtcatcaactct
ttcttcaaggattggcccgagaaacctcttgatttccctaaagttattgttaaggaaatt
ggagttgagagcgatgtaattcaagagaagtcttccattaaggcagaactcagcaacgac
gaggaaggagatacttcagctgtgaaagatggtgaaaatgacgaccctcaagaagaggga
gaaatcactgactag
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