Spinacia oleracea (spinach): 110798364
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Entry
110798364 CDS
T05137
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03022
Basal transcription factors
soe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110798364
09124 Replication and repair
03420 Nucleotide excision repair
110798364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110798364
03400 DNA repair and recombination proteins [BR:
soe03400
]
110798364
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110798364
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110798364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
110798364
NCBI-ProteinID:
XP_021859258
UniProt:
A0A9R0J0U6
LinkDB
All DBs
Position
2:112824748..112831008
Genome browser
AA seq
305 aa
AA seq
DB search
MAPIASKLYTDDVSLVVLLLDTNPYFWTSSSSSSLSFSHFISHVLSFVNSILLLNQLNQV
VIIATGHNTCGYIYDSSLSSVSSSISANESSGDAKMPAFCSEVLKSLEDFVKNDESLSSV
DAGNGVGSSLLSGSLSMALCYVQRVFRTGPLHPQPRILCLHGSPDGPEQYVAVMNSIFSA
QRSMVPVDSCVIGAQHSAFLQQASYITGGVYLKPQYLDGLFQYLSTVFATDLHSRKFIQL
PKPVGVDFRASCFCHKNTIDMGYICSVCLSIFCMPHKKCSTCGSEYGQAQSDASTLSGQK
RKEPS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattgcttccaagctctacactgacgatgtgagtttggtggtactattactc
gacacaaatccttatttctggacttcttcatcttcatcttctctctccttctcccacttt
atctctcacgttctctcgttcgtcaattcgattctgttgctcaatcagttgaaccaagtg
gtgatcattgcaacaggtcataatacctgcggttatatttatgattcgtcgttgtcgtcg
gtttcttcatcgatttctgccaatgagagctccggtgatgctaaaatgccggctttttgc
tccgaagttctcaagagtttggaggattttgtgaaaaatgatgagagtttgagctctgtt
gatgctggtaatggcgtgggttcctcccttttatcgggttccttgtccatggctctttgt
tatgttcaacgtgtttttcgtaccgggccgcttcatcctcagccaagaatattatgcctg
catggatcccctgatggacccgagcaatatgttgctgtgatgaattccatcttttcagct
cagcgctccatggtccccgtcgattcttgtgttataggagcacaacattctgccttcttg
cagcaggcgtcctatataaccggtggggtctatttgaaacctcagtatctagatggacta
ttccaatatctttctactgtatttgctactgatttgcactcaagaaagtttatacagctt
ccaaaacctgtaggagttgattttcgagcctcgtgcttctgtcacaaaaacacgatagat
atgggttacatatgttcagtttgcttgtcaatattctgtatgccccacaaaaaatgttct
acgtgtgggtcagagtatggccaagctcaatcagatgcatcaacactatcaggtcagaag
agaaaagagccatcatga
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integrated database retrieval system
