Spinacia oleracea (spinach): 110799407
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Entry
110799407 CDS
T05137
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110799407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110799407
03041 Spliceosome [BR:
soe03041
]
110799407
03036 Chromosome and associated proteins [BR:
soe03036
]
110799407
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110799407
Spliceosome [BR:
soe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110799407
Complex B
110799407
Complex C
U2 SnRNP specific factors
110799407
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110799407
TFTC complex
110799407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110799407
NCBI-ProteinID:
XP_021860362
UniProt:
A0A9R0J357
LinkDB
All DBs
Position
3:complement(31394905..31411750)
Genome browser
AA seq
1405 aa
AA seq
DB search
MAVTEEESSSSSTSAAKSRFQSSNDVHYLAKCVLPSSVVLQVVHGHIRSPFSYDIVLAKE
TSIELVVIGEDGVVQSICEQPVFGVIKDVAVLPWNKKLRTQNSEVLGKDLLVIISDSGKL
SFLTFCNEMHRFFPVTHVQLSSPGNSRHQIGRMLAVDSLGCYIAVSAYEERVALFSVSAS
SDVDMIDKRIIYPPQPEDDMIDIGLQQTRQSVLVNSLPAEKVGDSAPTPPVGCINGTIWS
MCFISKHSDELSKERNPVLAILVTRMESFLNELLLLGWDVRENAIHVLSRFMESGPLAHT
IAEVPGSRGLAFLFRVGDILLMDLSDACNPCCVQRTDLSTPIDLMEESSCMEDPFKIQDG
DDEGFIAARALLELQDYGMDFSKGNDPMSIDADMRRAKSVPLYVCSWSWEPGTDMKPKMI
FSTESGEYFSIEITYGPDGPKAFLSLNLFVGLPSKDLLWTKGGFLAAIVEMDDGMVLKLV
DDEYLQYIGPIQNVAPILDMSVMDYHDEKQDQIFACCGMAPDGSLRIIRNGVNLERLIRT
APIYQGITAIWAVKMRVKDSNHSFLVLSFVEETRVLSVGVSFTDVTDSVGFQPDICTLAC
GLVVDNVLVQIDQSSVRLCLPTSVAHPEGIPVSSPAGTSWSPDNVGISLGAVGHNMIIVA
TANPCFLIILGVRLLSLYEYEVYEMQHVRLDSELSCISIPQMHSIGKESGPIPAGFDIGN
TVVIGTHKPSVEILSYVHGQGIRVLATGMISLTNTTGTAISGCIPQDVRLVLVDRLYILS
GLRNGMLLRFEWPTASRVSDFPSYRTSLFSKSGLLKASAPAIVGPQLSGVNSYEKPKDND
PVHLLVIAIRRIGITPVFLVPLSESLDADVIALSDRPWLVQAARHSLSYISISFEPSTYV
TPVCSAECPKGLLFVAENCLHLVEMVHSKRLNVQRFRLDGTPRKVLYHSESRLLLVMRTD
LNNPDSSSSDICCVDPLSGSVLSSYKFDGGETGKCMEFVQVGNQQVLLVGTNLSTGPAIM
PSGEAESTKGRLIMLRLEHLPNSDSGSMTMRLKPSSSMQQFSPFCEAAGYTAERMSNSSR
CSSPDDNSCDEVKHEDSEGWQLQLLNSITWPGVVLAICPYLDHYFLASSGNAFYVCGFQN
DNPRRLKRYAVERTRFMIVSLTAYFTRIAVGDCRDGVLFYSYHEDAKKLEQIYCDPGQRL
VADCLLTNLNTAFVSDRKGSIAVLTSSTHLEDYASPECNLTVTCSYYTGEIAMSIRKGSF
SYKMPAEDGFEECHAGNNVTDMSRNGIMAGTLLGSILIFIPISREEYELLKPVQARLAVH
PHTAPILGNNHSEFRNRENQQAVVPTMLDGDMLAQFLELTSIQQEAVLGLPCATSEVSSS
SRSPHSPISVDQVVQLLERIHYVLN
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcggttactgaagaagaatcatcttcctcatcaacatcggcagcaaagtcccgattt
caatcgtctaatgacgttcattatctcgccaaatgcgttcttccgagctccgttgttctt
caagttgttcatggccacattcgctcccctttttcctacgacatcgttctcgctaaggag
acatctattgagttggtagttattggtgaggatggcgtggtgcaatcaatatgtgagcaa
ccagtatttggtgtgataaaagacgtggctgttcttccctggaacaagaaactccgtacc
caaaattcagaggttcttgggaaagacttgttagttattatttctgattctggaaagctc
tcttttctcacattttgtaatgaaatgcacaggttctttccagtgactcatgttcaactt
tcaagccctggcaactccaggcatcagattggtagaatgcttgctgttgattcccttggc
tgttacattgcggttagtgcatatgaagaacgtgtagctcttttttctgtttcagcatca
agtgatgttgatatgattgacaagcgtataatctatcctcctcaaccagaggatgatatg
attgacataggactccagcaaaccaggcagtctgtcttggttaattcattgcctgcagag
aaagtaggtgactctgctccaacacctccagtgggttgtataaatggcactatatggagt
atgtgcttcatttcaaagcattcagacgaattgagtaaggagcgcaatcctgtactagct
attcttgtcactaggatggaatcgttcttgaatgagctgcttcttttgggatgggatgtc
agagaaaatgctatccatgttctttctaggtttatggaaagcggacctttagcacatact
attgctgaagttcctggatcccggggacttgcatttttattcagggttggtgatatccta
cttatggatcttagtgatgcctgtaacccatgttgtgtgcaaagaacagacctgagcact
ccaattgatttgatggaggagagtagttgtatggaagaccctttcaagattcaggatggt
gatgatgaaggtttcattgctgcgcgtgctctgttagagttgcaggactatggcatggat
tttagtaagggtaatgatcccatgagcattgatgcagatatgcgccgtgctaaatctgta
cccttgtatgtgtgttcatggagttgggaaccaggaacagatatgaaaccaaagatgata
ttctcgacggagtctggggaatatttttctattgaaatcacttatggccctgatggtcct
aaggccttcttatctcttaatctttttgttggtctccccagtaaagacttgttgtggacc
aaaggtggctttctggcagcaattgtggagatggatgatggtatggtcctaaaattggta
gatgatgaatatcttcaatatataggtcctattcaaaatgttgcgcccatcctagacatg
tcagttatggattaccacgacgaaaagcaggatcaaatttttgcttgctgtggaatggct
cctgatggatcattgaggataatcagaaatggtgtaaatctagaaagattaataaggaca
gctcctatatatcaaggaataactgccatatgggctgttaagatgagggtaaaagattct
aatcactcttttctcgtgctttcttttgttgaggaaaccagggtgttgtcagtcggtgta
agcttcactgatgtaactgactcagttggttttcaacctgatatctgtacattagcatgc
ggtcttgttgttgataatgtgttggttcagattgatcaaagttctgtcagactttgcttg
cctacttcagttgcccatcctgaaggcattccagtgtcttcccccgcaggtacctcatgg
tctcctgataatgttggcatcagcctaggtgcagttggacacaacatgataattgttgct
acagcgaatccttgtttccttataatacttggtgttagattgctatcattgtacgagtat
gaagtatatgagatgcaacatgttagacttgatagtgaattgtcttgcatatctattccc
caaatgcacagcataggaaaagaatccggccctatcccagctgggtttgatattggcaat
acagttgtgattggtacacacaagccatctgttgaaattctatcttatgtacatggtcaa
ggcatacgagttcttgccactggaatgatatcactgacaaatacgactggtactgctatc
agtggctgtattccgcaggatgtaaggcttgtgctggttgataggttgtatatcctctct
ggactaagaaatggaatgttgttacgctttgagtggcctacagcatcccgtgtatctgat
tttcccagttataggacctctttgttttcaaaatctggtttgttgaaggcatcagctcca
gccattgttggtccacagcttagtggtgtcaactcttatgaaaagccaaaggataacgat
cctgttcatctcctagtaatcgcgattcgtcggattggtattactcccgtgttccttgtt
cctctcagcgagtcattagatgctgatgttattgctctcagcgacaggccttggttagtc
caagctgccaggcacagcctctcatacatttcaatctcattcgaaccttcaacttatgtg
actcctgtatgctcagctgaatgtccgaagggacttttatttgtagcagagaactgtctg
catctggtggagatggtgcacagtaagaggcttaatgtgcaaaggtttcgtctggatgga
actccacgaaaggtcttgtatcatagtgagagcaggttgctgctcgtgatgagaactgac
ttgaataaccccgattcgtcttcctctgatatttgctgtgtagatccccttagtggctcg
gtgctctcgtcttataaatttgacgggggtgaaactggaaaatgcatggagtttgtgcag
gtcgggaatcagcaggtattgttggttgggaccaatttatctactgggccagctataatg
cccagtggagaagctgaaagtaccaaggggcgtttgataatgctccgccttgagcacttg
cccaattcggatagtgggtctatgacaatgcgtctgaaaccgagttcatctatgcaacaa
ttttcgccattttgtgaagctgctgggtacactgctgaaaggatgtctaatagcagccgt
tgcagtagcccggatgataatagctgtgatgaagtgaagcatgaagattctgaaggttgg
cagctacaacttcttaactcaattacttggcctggagtggtgcttgcaatttgtccttac
cttgatcattacttcttggcttcttctggcaacgctttctatgtttgtggctttcaaaat
gataatcccaggagactcaagaggtatgctgttgaaagaacgcggtttatgatagtctca
ttgacagcctacttcaccagaattgctgttggtgattgccgtgatggtgtgcttttttat
tcttatcatgaggatgcaaagaaactggagcagatctattgtgatcctggtcagaggtta
gttgctgattgtctgcttactaatctcaacactgcctttgtttctgatcgtaagggaagc
atcgctgtcctgacatcctcgacccatttggaagactatgccagtcctgaatgcaaccta
acagtgacctgctcatattacacaggcgagatcgcaatgagcatcaggaaggggtcattt
tcttacaaaatgcctgctgaagatggatttgaggagtgccatgctggtaataatgttact
gatatgtcacgcaatggtattatggctgggacactacttggaagcattttaattttcatc
cctatatccagggaggaatatgagcttttgaagcctgtacaagccagacttgcagtacac
cctcatactgctcctattcttgggaacaatcatagtgagtttcggaatcgcgagaaccag
caggctgtggtgcctacaatgcttgatggagacatgttagcccagtttttggagcttaca
agcattcaacaagaagctgtgttgggattaccgtgtgcaacttctgaagtgtcatcaagc
tccaggtcacctcattcacccatatcagtcgaccaggttgtgcaactccttgaacggatt
cactatgtactaaattga
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integrated database retrieval system
