Spinacia oleracea (spinach): 110801588
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Entry
110801588 CDS
T05137
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
soe04121
]
110801588
Ubiquitin system [BR:
soe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110801588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Rapsyn_N
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
110801588
NCBI-ProteinID:
XP_021862674
UniProt:
A0A9R0K8R3
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Position
2:complement(112346498..112369915)
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AA seq
776 aa
AA seq
DB search
MEFFAYRDGNISNFIDNRTIDFRHDFKHTLQMHSSMVRRLSLERELEGHIGCVNTIAWNS
KGTLLISGSDDTQINIWRHSDRKLLNSIETGHSSNIFCTKFVPETSDEIVVSGAGDAEVR
VFNISCLSGGRAEEIQETAMTPYAHFQCHTRRVKKLAVEVGNPNVIWSASEDGTLRQHDL
REGCSCPPAGSSNQECRSVLLDLRGAAKRSLAEPPKHLLQLKSCDINVTRPHLLLVGGSD
AFARLYDRRMLPPMSSCRRKTSPPPCVNYFCPMHLSERGNSGLHLTHVTFSPNGEEILMS
YSGEHVYLMDLNQDGRNARQYTCGDVVKHWSFSPALNGVELSPLVAVASERISSAKSYAT
VQSDKSRKLMEIAKICLEDEEQYCIGIEDREQYCYGIEACNEVLDGGCAIDSLMKHDCLC
TRAALLLKRKWKNDAHMAVRDLNEARKINSSSFKELVYMSEALSQVSKYKEALDFAHAAQ
GLDSSNAEVAKMVESIRNELSAAEKNKKLNDVGSKSDPRAGGIISLSDILYRTEANSDAS
RDGPRSEREESDEEIELDFETSMSGDEGRDAEPNVLHGSLNLRVPKQTDSAREAGGSNRF
CGSPSSSCQDDETIYQPEAVIDMKQRYAGHCNVGTDIKQASFLGQNGDYIASGSDDGRWF
IWEKKTGRFIKMLLGDEAVVNCIQCHPFESVVATSGIDNTIKIWTPSASVPSMITGGSAD
SVSVGVEKAQVLMAMESNQQSLCQTREDILPRELFDRFRRHGFTEGTLHPFECAQS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggagttcttcgcctatcgcgacggtaacatttccaatttcatcgacaaccgtacaatc
gacttccgccatgatttcaaacatactttacaaatgcactcgtccatggtgcggaggctg
tcactggaaagggaattggagggacacataggttgtgtaaatactattgcttggaactca
aagggtacactcctgatatccggatcagacgacactcagattaatatttggaggcactct
gatcgtaaacttttgaattccattgagacgggtcattcttccaacatattctgtacaaaa
tttgtacccgagacttctgatgagattgtggtgtctggggccggtgatgcggaggttcgt
gtgtttaatatctcctgcttaagtggaggaagggctgaagagattcaagagactgctatg
actccttatgctcattttcagtgtcacactaggagagtaaaaaaattagcggttgaggtt
ggaaacccaaatgtgatatggagtgctagtgaagacggaaccttgagacagcatgatctt
cgtgaaggttgttcttgtccccctgctggatcttccaatcaagaatgccgcagtgtacta
cttgacttacgtggtgctgcaaaaaggtccttggctgaacctcctaaacacctgcttcaa
ttgaagtcttgtgatatcaatgtgacaaggcctcatctgcttcttgtcggtggaagtgat
gcatttgctcgtttgtatgatagaaggatgctgcctccgatgtcttcgtgtcggagaaaa
acttcaccacctccttgtgtaaactatttttgcccaatgcatctctctgagcggggtaat
tcaggcttgcatttaactcatgtaacttttagtcccaatggcgaagaaattcttatgagt
tatagtggcgaacatgtctacctgatggatttaaatcaagatggtagaaatgctaggcag
tacacatgtggagatgttgtaaaacactggagcttttctcctgctcttaatggagtggaa
ctttcacctttagtagctgttgcttctgaaagaatctcctcagccaaaagctatgctact
gtgcagagtgacaagtccagaaaactgatggaaattgcaaaaatatgcttggaagatgag
gaacagtattgcattggaattgaagatagggaacagtattgctatggaattgaagcatgc
aatgaagttctggatggaggttgtgcaattgattccctgatgaagcatgattgtctctgt
acacgtgctgccttacttcttaagcggaagtggaaaaatgacgcccacatggctgtaagg
gatttgaatgaagctcgaaaaattaattcatcttcttttaaagaactcgtctacatgtct
gaagctttatcccaggtgagcaagtataaagaagctctagattttgctcatgcagctcag
ggtctggattcctcgaatgctgaagtggcaaaaatggtggaaagtatacggaacgagctt
tcagcagctgaaaagaacaagaagttgaatgatgtaggatccaaatctgacccacgtgct
ggcggaattatatcattaagtgacatactttaccgcacagaagctaatagtgatgcttca
cgagatggtcctaggtctgaaagagaagagtctgatgaagaaatagagttggattttgaa
acgtcaatgtcaggtgacgagggccgtgatgccgaaccgaatgttcttcatggaagtttg
aatttgagggttcctaaacaaactgattcagctagagaagctggtggttcaaataggttc
tgcggatctccatcttcttcctgccaagatgacgaaacaatttatcagccagaagcagtc
attgatatgaaacagagatatgctggtcactgtaatgtaggaaccgacataaaacaggct
agtttcttgggccagaatggtgattatattgcaagtggaagtgatgatggcagatggttt
atttgggaaaaaaaaactggccggtttatcaaaatgctccttggagatgaagctgtggtg
aattgcatccagtgccacccatttgagtctgttgtggctactagtggaatagataatacg
attaagatttggactccaagtgcttccgtcccctccatgataactggagggtcagctgat
tctgtttcagtaggtgttgaaaaggctcaagtcttgatggcgatggaaagcaatcaacaa
agcttgtgccagacacgtgaagatattctgccacgtgaactgttcgataggtttcgcagg
catggcttcaccgaaggaacgctgcatccgtttgagtgtgctcagagctag
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