Spinacia oleracea (spinach): 110802599
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Entry
110802599 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110802599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110802599
03012 Translation factors [BR:
soe03012
]
110802599
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110802599
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110802599
Translation factors [BR:
soe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110802599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
OB_NTP_bind
HA2_C
HA2_N
ATPase
AAA_19
Ank_5
Ank_2
nSTAND3
AAA_22
ResIII
AAA_7
AAA_25
Rad17
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
110802599
NCBI-ProteinID:
XP_021863736
UniProt:
A0A9R0J9J6
LinkDB
All DBs
Position
3:70533003..70553856
Genome browser
AA seq
1172 aa
AA seq
DB search
MVKSSQKRQKFGSFFGPEHTAGVGETTRIGITKQLQQFRASHDQVYTFEANMTNRERAVV
HQESKKMGMISKSTGKGVQRCVAVYKSKQKSDCLEKKENSVIKFSEESKRVLTDLFIHYP
PGEDEARKQNFNKPSGNIPKSRERDNIFCMPVMSKAEIKKKVELFTSKIQKTRNLKEIFE
KRSKLPIANFQDIITSTVANHQVVLISGETGCGKTTQVPQYLLDCMWARGEPCKIICTQP
RRISATSVAERISTERGECIGESVGYKIRLDTKGGRNSSIIFCTNGIMLRVLVARGSNKS
LSGAVDLSQISYIIVDEIHERDQHCDFMLAILRDLLPTYPNLRMVLMSATLDAERFSQYF
GGCPIIRVPGFTHPVKSFYLEEVLSILKTPENDHLNSSSSSHLNEEGSLSEESCVALDEA
IALASSNEEFDPLLELISSVGTPKALNYQHSSTGVTPLMVFAGKGRVGDMCTLLSLGADC
HLQARDGSTALDWAKRENQPEAKEIIMKHMVDSSSSSVEEQQLLENYMSRFNPEFIDVVL
IGKLLTKICLESENGAILVFLSSWEDINRTRETLFAKPFFKDSSKFLILSLHSMVPATEQ
KKVFKRPPVGCRKIILSTNIAETAITIDDVVYVIDGGRMKEKSYDPYSNVSTLQSSWTSK
ASAKQREGRAGRCQPGVCYHLYSKLRAVSLPDFQVPEIRRMPIEELCLQVKMLDPNCKVE
DFLKKTLDPPVSETIKNAITVLQEIGALSLDERLTELGKKLGTLPVHPLTSKMIFFAILL
NCLDPALTLACAAAYRDPFTIPMLPNDKKRATAAKEELASLYGGYSDQLAIVAAFDCWRS
AKEKGQESRFCSEYFVSPSIMNMLSGMRKQLVNELIRTGCIPEDVSSCSMNAREPGIIRA
ILVAGLYPMVGRLHAPFKRGRKLTVETASGEEVHLHPHSINSKLCINESDEPLLLVYDEI
TRGDSGLNTRNITIIGPLPVLLLATDIVVAPARDDTGNDSGSDAAGDEDNDAGEMEGIEK
LSKPEEVMSLPENAVTLIVDRWLSFESTALEVAQIYCLRERLSAAILFKVTNPSSVLPPT
LGTSVYAIACLLAYDGMMGVSLNESVETLTSMVHNTEIGNSSAGKKKANHVPKSFLTSLI
NHTTPQISNSSSRPARAMGGSSKRRRGNNKSG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaatcatcgcagaagaggcagaagttcgggtcatttttcggcccggaacatacc
gccggcgtcggagaaactacccgtattggtattaccaaacaacttcaacaatttcgggct
tctcacgatcaagtttatacttttgaagctaatatgacaaaccgtgaacgtgctgtggtt
catcaggagtccaaaaaaatgggtatgatttcaaaaagtactggaaaaggggttcagcga
tgtgttgcagtgtacaaaagcaagcaaaagtccgattgcttagagaaaaaggaaaatagt
gtgataaaattctcagaagaatctaaaagggtcctgaccgacttatttattcattatcca
cctggtgaggatgaagctcgaaaacaaaattttaataagcccagtggtaatattcctaag
tcacgggaaagagataatatattctgtatgcctgtaatgagcaaggctgaaataaaaaag
aaggtggaattgttcacgagcaaaatacagaaaacacggaacttgaaagagatatttgag
aagaggtctaagcttcctattgcaaatttccaagatattatcacgtcaacagtcgcaaat
catcaggtcgtgctcatatctggagagacgggctgtgggaagactacacaggttccacaa
tatcttttagattgcatgtgggctaggggtgagccttgtaaaataatctgtacacaacca
cgacgtatttcagctacatcagtcgctgaaagaatttctactgaaagaggagaatgtatt
ggagaaagtgttggatacaagatacggctggataccaaaggtggaagaaattcatccatc
atattttgcacaaatggaatcatgcttagggtgcttgtggctaggggatctaataaatcc
ctatcaggagctgtggacctctctcagatctcctacatcattgtggatgagattcatgaa
agggatcaacactgtgactttatgcttgcgattctcagagacttgcttccaacctatcca
aatttgcgcatggtgctgatgagtgctacacttgatgctgaaagattttctcagtatttt
ggtggctgtccaatcatccgtgtgcccggatttactcatcctgtcaaatcattttacttg
gaggaagttctgtccattttgaaaactccagagaatgatcatcttaattctagttcgtct
agtcacctgaatgaagagggcagcctgagtgaggagtcttgtgtagcgctagatgaggcg
attgcgctggcaagttcaaatgaagaatttgaccctctcctagaattaatttcttctgta
ggaacacccaaagctctgaactaccagcattcttcaactggagtgacccctttaatggta
tttgctggtaaggggagagttggagatatgtgtacacttctctccttaggtgcagactgc
catctgcaggcccgtgatggaagcactgcattagattgggccaaacgtgaaaatcaacct
gaagctaaagaaatcataatgaaacacatggttgatagctcttcgagctcagtggaagaa
cagcagttgcttgaaaactacatgtcaagattcaatccggaatttatagatgttgtctta
attggaaagttgctgacaaagatatgcttggagtcggagaatggagctattcttgtattt
ctttcaagctgggaagacataaacaggactcgagagactttatttgctaagccatttttc
aaagattcttcaaagtttctaattttatctcttcactctatggttccagcgaccgagcaa
aagaaagtctttaaaaggccacctgtaggttgccgcaaaatcatcctttctactaatata
gctgagactgccatcaccattgatgatgttgtttacgtcattgatggtggtcgaatgaag
gagaaaagttatgatccatacagtaatgtgtcaaccctacaatcttcttggacttcaaaa
gcaagtgcaaagcagcgggagggacgtgcaggccgctgccagcctggagtctgttatcat
ctgtattcaaaactacgagcggtctcacttccggacttccaggtgcctgaaataaggaga
atgcctattgaggagctgtgtttgcaggtcaagatgcttgatccgaattgtaaagttgag
gattttttgaagaaaaccctagatcctccggtatctgagacgataaaaaacgcaatcact
gttctccaagaaattggtgcgttgtcacttgatgagcgattgacagaattggggaagaaa
ctgggtaccttgcctgtgcatccattaacgagcaagatgatattctttgctatattgttg
aactgccttgatccggcattgacccttgcatgtgcagctgcttatagagatcccttcact
atacccatgctaccaaacgacaagaaaagagcaactgcagcaaaagaagaacttgcgtca
ttatatggaggatacagtgatcaattggcgatcgttgcagcatttgactgctggaggagt
gcaaaggagaagggtcaagaatcacgtttttgttctgaatattttgtgtccccaagcatt
atgaatatgttgtctggtatgcgtaaacaacttgttaatgagttaattaggactggatgt
ataccagaagatgtgtcaagctgtagtatgaatgcgagagaaccgggtataattcgtgca
attcttgtggctggcttgtatccaatggtgggaagattgcatgcaccttttaagaggggt
agaaagctgactgtggagacggctagtggtgaggaggtgcatttacatccacactcaatc
aactcaaagttatgtattaacgaatctgatgaaccccttctacttgtatatgatgagata
actcgtggggacagtggtttgaacacaaggaacatcactatcatcggtccacttcctgta
ttattacttgcaacagacattgttgtggcacctgcaagggacgacactggtaatgatagt
ggaagtgatgctgctggtgatgaggataatgatgcaggtgaaatggaaggcattgagaaa
ctgagtaaaccggaagaggtcatgtcattgcctgagaatgctgttacattaattgttgat
cgctggctttcctttgaatctacagctcttgaagttgctcagatttactgtttgagagag
cggttgtctgcagctatccttttcaaagtaacaaatccaagttcggttcttccaccaact
ctcggaacttctgtttatgcaattgcctgtcttcttgcttatgatggaatgatgggagtt
tcattgaatgaatctgtggagactttgacttcgatggtacataatactgaaattggtaac
tcgtctgcagggaagaaaaaagcaaatcatgttccaaaaagcttcctcacatctctaatc
aaccatactactccacagattagcaattcttcatcgcggccagcgagagcaatgggaggc
tcgtcaaaacgacgacgtggcaataataagtctggctaa
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