Spinacia oleracea (spinach): 110802681
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Entry
110802681 CDS
T05137
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110802681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110802681
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110802681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_15
TPR_19
TPR_2
TPR_CcmH_CycH
TPR_16
TPR_Slam
DUF1993
Motif
Other DBs
NCBI-GeneID:
110802681
NCBI-ProteinID:
XP_021863814
UniProt:
A0A9R0K9U7
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Position
5:23338085..23363859
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AA seq
749 aa
AA seq
DB search
MADNLDNNNTYNVEAAEILANEALHLPITEATLIYEQLLVIYPTAAKFWKQYVEAQMAVN
NDDATKQIFSRCLLNCLQVPLWRCYIRFIKKVNEKKGFDGQEETRKAFDFMLNYVGADVA
SGPVWIEYISFLKSLPARSAQDETQRMAVVRKAYQKAIVTPTHLVEQLWKDYENFENSVS
RVLAKGLISEFQQKFNSARAVYRERKKYVDDIDWNMLAVPPTGSCKEEQQWVTWKKLLAF
EKGNPQRIDSASSNKRIVFAYEQCLMYLYHYPDIWYDYASWHAKSGSVDSAVKVYQRALK
ALPDSEMLKYAYAELEESRGAVQPAKKIYESLLGDAVNATALSHIQFIRFLRRSEGVEAA
RKYFLDARKSPNCTYHVYVAYAMMSFCLDKDPKVAHNIFEAGLKRFMHEPGYILEYADFL
SRLNDDRNIRALFERALNSLPPEESVEVWKRFAQFEQTYGDLASMLKVEQRRKEALSRTS
DDGGLAQEGSLQEVISRYSFMDLWPCSSKDLDHLARQEWLTMNMNKRPEKSSVPNGVTTT
GEEKSTSGVTTVMDQASKVVYPDITQMVIYEPGQKQGSTVLPSGVVGGLPSVSTTMSTFD
GILKAAPPALVAFIANLPAVEGPAPDVDFVLSICLQSNPVTAHAVKHMTSAGQVPAGAAS
GVSEPSGSHKARPAPSGSSVRMTRDGQSGKRKNADRQDDDETASVQSVPLPKDAFRLRQL
QKSRGGTASQTGSTSYGSAFSGEQSGSTS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatctcgacaataataatacttacaatgttgaagctgctgagattttggct
aatgaagcattgcatctcccaattactgaagcaactcttatatatgaacaacttctggtc
atctaccctactgctgccaaattttggaagcagtatgtggaggcacaaatggctgttaat
aatgatgatgctacaaaacaaatatttagccgttgtctattgaactgtcttcaagttcct
ctttggaggtgctatattcgttttataaagaaggtcaatgaaaagaagggctttgacggt
caggaagaaacaaggaaagcttttgattttatgctgaattatgtcggagctgatgttgca
tcgggccctgtatggatagagtacatcagcttcttgaagtccttaccggctcgttcagca
caggatgagactcagcgtatggctgttgttcgcaaagcatatcaaaaagctattgttact
ccaacgcacctcgtcgagcaactatggaaggactatgagaattttgaaaattctgttagc
cgtgtgctggctaaaggacttatttcggagttccaacaaaaatttaatagtgcgagagca
gtctatcgggagcggaagaaatatgttgatgacattgattggaacatgctggctgtcccg
ccaactggttcttgcaaggaagaacagcaatgggtgacatggaaaaaacttttagcattc
gaaaaggggaatcctcaaaggattgacagcgcatcatctaataagagaattgtttttgct
tatgaacagtgtctgatgtatctatatcattatcctgatatatggtatgactatgcttca
tggcatgcaaaaagtggttctgtagattctgctgtcaaagtttatcagagagctctgaag
gctcttccagattctgagatgctgaagtatgcttatgctgagctggaggaatcccgtggg
gcagtccagcctgcgaagaagatttatgagagcctgttgggtgatgccgtgaatgcaaca
gccctttcacatatacaatttattagattccttagaagaagtgaaggagttgaagccgcc
cgcaaatattttcttgatgctcgaaagtcaccaaattgcacttatcatgtttatgttgca
tatgctatgatgtctttttgccttgacaaggatccgaaggttgctcataatatatttgaa
gcaggactaaaacgttttatgcatgagcctggatacatcctcgaatatgcagattttttg
tcacgtttgaatgatgatagaaacattcgagctttgtttgaacgtgcactcaactcgctt
ccacctgaagaatctgttgaggtttggaaacggtttgcacaatttgaacaaacatatgga
gacctggctagtatgctgaaggttgagcaaagaaggaaagaggctctttcccggacaagt
gatgatgggggtttagcacaggaaggttcactacaggaagtaatttcacgatacagtttc
atggatctttggccatgttcatctaaggatctggatcatttagcacggcaagagtggctc
actatgaacatgaataaaagaccagagaagtctagcgtaccaaatggagtaactactaca
ggtgaagagaagagtacttcaggagttaccactgtaatggatcaagcttccaaagtggtt
tatccggatattacccagatggtgatatatgagccggggcagaaacaaggatcaacagtt
cttccaagtggagtggtaggtggtcttcccagcgtctctactaccatgtcaacatttgat
gggattttgaaagcagctcctcctgcgcttgtagcatttatagcaaatcttcctgccgta
gaaggtccagcaccagatgtagattttgtgctgtcaatttgtttgcaaagcaaccctgta
actgcacatgcggtgaagcatatgacatcagcagggcaagtacctgcaggagctgcttct
ggtgtaagtgagccttctggctcacacaaagcccgccctgctccaagtggttcatctgtg
agaatgacaagagatggacaatctggaaagaggaaaaatgcagatagacaagatgatgat
gaaactgcatcagtgcagagcgtgcctcttcctaaagatgccttcagattacgtcaattg
cagaaatctcgtggaggaacggcctcacaaacgggatcaacatcatatggaagtgccttt
tcgggagaacagtctggtagcacaagctga
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