Spinacia oleracea (spinach): 110803791
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Entry
110803791 CDS
T05137
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe04120
Ubiquitin mediated proteolysis
soe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110803791
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110803791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
soe04121
]
110803791
Enzymes [BR:
soe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110803791
Ubiquitin system [BR:
soe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110803791
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110803791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_WDR19_1st
Beta-prop_DCAF4
EIF3I
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EML
zf-C3HC4_3
WD40_like
WD40_RFWD3
zf-RING_2
Beta-prop_WDR75_1st
Beta-prop_SCAP
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
zf-RING_5
zf-C3HC4_4
YbfN
Beta-prop_DCAF12
U-box
zf-Nse
Prok-RING_4
Baculo_p24
DUF1664
Motif
Other DBs
NCBI-GeneID:
110803791
NCBI-ProteinID:
XP_021865007
UniProt:
A0A9R0JD96
LinkDB
All DBs
Position
2:96287112..96296475
Genome browser
AA seq
672 aa
AA seq
DB search
MEERETSTGALVPAVKPLSVVPPPPAPESAVSGDELVVSPTEADKDLMCPICMQMIKDAF
LTACGHSFCYMCIITHLRNKSDCPCCGRHLTNNQLYPNFLLDKLLKKASVRQVSKYASPV
EQFRRALLQGCEVSVKEVDTLMSLLAEKKKKMEQEEAERNMQILLDFLHCLRKQKVDELN
EIQNDLQYVKEDITAVERHRMELYRARDRYSVKLRMLGDDSTPKLWPSTADRSTGGVSSG
SRSSLGGLAMGNFQNKKMDCKAQGSHGNQRKDALSGLDSQYISQSGLAVMRKKRIHVQFN
DLQECYLQKRRQLTDQPIRQDERDPNFVQREGYSAGLAEFQSVLSTFTRYSRLRVIAELR
HGDPFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPAESHCPVVEMSTLSKL
SCLSWNKFTKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSCTEPSMLVSGS
DDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSYHIAVGSADHHIHYYDLRNVSQPLH
VFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKESLPVRTFRGHTNEKNFVGLSVNSE
YIACGSETNEVFVYHKEISRPVTCHKFGLPDVEDADEDAGAYFISAVCWKSDSPTLLTAN
SQGTIKVLVLAA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagagaaacctccactggggctttggtaccggcggtaaagcctttatcggtg
gttcctcctccaccggcaccggaatctgccgtctccggtgacgaattggtggtttcgccg
acggaagcggacaaagatttgatgtgtccgatttgtatgcagatgataaaggatgctttt
cttaccgcttgtggacatagtttttgttacatgtgtatcatcactcatcttcgtaataag
agtgattgtccttgttgcggtcgtcatcttacaaacaatcagctttatcctaatttcctc
ctcgacaagctattaaagaaggcttcggttcgtcaagtgtcgaaatatgcatctcctgtt
gaacaatttcgccgtgcattattgcagggttgtgaagtgtcagtcaaggaggtggatacc
ctcatgtcacttcttgcagagaagaagaaaaagatggagcaagaagaagctgagagaaac
atgcagattttgctggatttcttgcattgcttgagaaagcagaaagtggatgagctcaat
gagattcaaaatgacctgcagtacgtcaaagaggacatcactgctgttgagaggcataga
atggagttatatagagcaagggataggtactcagtaaaattgcgaatgctcggtgatgat
tcaaccccgaaattgtggccgtcaacagctgataggagtactggtggtgtttcctctggt
tcacgtagctcactaggagggttggctatgggaaatttccagaacaagaagatggattgt
aaggctcaaggctcccacgggaatcagagaaaggatgctttaagtggtttggactcacag
tacattagccagtcaggtttggctgtgatgagaaaaaaaaggatccatgtgcagtttaat
gacctgcaagaatgttacctgcaaaagcgacgccagttaactgaccagccaatcagacag
gatgagagggatccaaattttgtgcagagagaaggctatagcgcaggtcttgctgagttc
caatctgtactatctactttcactcgttacagtcgattgagagttatagctgaactcaga
catggggacccttttcattctgccaatatcgtatcaagcattgaatttgaccgcgatgat
gagttatttgctacagctggagtttcccgaagaattaaagtctttgacttctcctcggtt
gtgaatgaacctgcagaatcacactgtcctgttgttgagatgtcaactttgtccaaactt
agttgtttgagctggaacaagtttaccaagaaccaaatagctagtagtgattatgaggga
atagttactgtatgggatgtgacgacacgccagagtgtgatggagtatgaagaacatgaa
aaacgggcatggagtgttgatttttcgtgcacagaaccttcaatgcttgtgtctggcagt
gatgactgtaaggtaaaagtgtggtgtacaaaacaagaagctagtgtgcttaacattgac
atgaaggcaaatatatgttgtgtcaagtacaatccaggatctagctatcatattgcggtt
ggttctgctgaccatcatattcactactatgatctgaggaatgtaagtcagccacttcat
gtgtttggtgggcacaagaaagcggtctcatatgtcaaatttttatcaacaaacgagctt
gcttcggcatcaaccgacagcacattgaggctgtgggacgtgaaagagagcttaccagtt
agaacatttagaggtcatactaacgagaagaacttcgtaggcttgtcagtaaatagtgaa
tacatagcctgtgggagtgaaactaacgaagtgtttgtctatcacaaggaaatttctaga
cctgtaacatgtcataaatttgggttgccggatgttgaggatgccgatgaagatgctgga
gcctatttcataagtgctgtatgctggaaaagtgatagtcctacattgttaacagccaac
agtcaaggaacaatcaaggtgctagtgcttgctgcttaa
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