Spinacia oleracea (spinach): 110804175
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Entry
110804175 CDS
T05137
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110804175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110804175
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110804175
mRNA degradation factors
5'-3' decay
Lsm complex
110804175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
110804175
NCBI-ProteinID:
XP_021865434
UniProt:
A0A9R0KBD8
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Position
1:131172661..131179924
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AA seq
128 aa
AA seq
DB search
MSWSGPEDLYLSTSLASYLDRKILVLLRDGRKLLGTLCSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDSEKEDLPPHMSRVSVAEIRKAQKAERDATDLKGLIRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggtccggtcctgaagatctgtatctgtcaacttctctcgccagctatcttgac
agaaaaattcttgttttactacgagatgggcggaaactcttggggacactttgttcattt
gatcaattcgcgaatgctgttcttgaaggtgcatgtgaaagagtcattgttggtgacctt
tattgtgacatcccattaggtttatacgtaatccgtggggagaacgtggtcttgattggt
gagctggattcggaaaaagaggatctccctcctcacatgtcacgtgtatcagtcgccgag
ataagaaaggctcaaaaggccgagagggatgccaccgatcttaaagggttaataagaaag
aggatggagttccttgatatggactga
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