Spinacia oleracea (spinach): 110804230
Help
Entry
110804230 CDS
T05137
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
soe
Spinacia oleracea (spinach)
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110804230
03036 Chromosome and associated proteins [BR:
soe03036
]
110804230
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110804230
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110804230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
HHH_3
Tex_central_region
SH2
S1
Motif
Other DBs
NCBI-GeneID:
110804230
NCBI-ProteinID:
XP_021865479
UniProt:
A0A9R0KBF3
LinkDB
All DBs
Position
1:23684492..23700195
Genome browser
AA seq
1649 aa
AA seq
DB search
MAGRAVVSDEEEELEVQDDEREQEEEGEELDDGGGGGGVDDDEDEDDEEGQDEFEDDGFI
VEGDEDEEEPEEEDDEERHKKKKRKKRESFELDDDDYELLLDNNVKVARKADSKKFKRLK
KARRDTDAGHSGLFDDDEFLGSGKGARTAQEQAKHTLFGDDDGGPVEDMPEEDEQPEADD
VDLADEDDMADFIVSEEDEMDADGMPVRRMDKKKKKHRQAAGVLPSSLQDAQDIFGDVEE
LLDMRRRANLEKDRYDENGLRKERNIGEEFEPTILAERYMTEKDDRIRDIDIPERMQISE
ESTGPPSTDAEAIVDEAKWIKKHLDSGQVPGLVNIASGEEMEYHIRNFLNFTHVQKLDLP
YIAMYRKEDIFSLLKDPETGEDASHDKPALKWHKVLWAVQDLDKKWLLLQKRKSALDGYY
NKRFEEESRRIYDETRLRLNQQLFESIIGALRDSESEREVDDVDAKFNLHFPPGEAGVDE
GQYKRPKRKSYYSLCNKAGLWEVASKFGHSSEQFGAAISLAVRVDEPEDPTETPEEVASN
FTCAMFDSPQAVLKGARHMAAVEISCEPYVKKHFRNNYFDNVVVSTCPTPDGNVVIDAFH
QFAGVKWLRNKPLNKFEDAQWLLIKKAEEEKLLQVTIKWPEEHLKKLIGDLELLYTSLAV
SKLAKPWNEQRRLILQDAIYNFILPALEKEARLLLTSRAKNWLLMDYGKCLWDKVSVAPY
QRKESDLSSDEEAAPRVMACCWGYGKPPTTFVMLDSFGEVVDVLVAGSISLRSQNVTDQQ
RKKHDQQNLLKFMTEHQPQVVVLGAVSLSCTRLKDDIYEIVFKMVEENPRDVGHEMDGLS
VFYGDESLPRLYENSRISSDQIPGHKGVVRRGVALGRYLQNPLAMVANLCGPGREILSWK
ISSSESFLEDDEKYGMVEQIMVDVTNQVGIDLNLSAHHDWLFAPLQFISGLGPRKAATLQ
KSLVRAGAIVTRKDLLTAHGLGRKVFISAAGFLRIRRSGLAVSTSQFVDVLDDTRIHPES
YALAQEMAKDIYREIVGDDNLDDDDAIDMAIENLRDRPSALKSFNVDAYAKDTDRLSKVE
TLYAIKLELIQGFQDWRKAYEEPNQDEEFNMISGETDATLGEGRIVQATVRRVQPQRAIC
GLESGLTGMLSREDFSDDWRDSDLTEKLHEGEILTCKIKSILKNRYQVILTCRENDMRDI
GQSVESVDPYYHEDRISLPSGQDKARRDKELAKKRFKSRMIVHPRFQNITADDAMELLAD
KDPGESVIRPSSRGPSYLTLTLKVYDGVFAHKDIIEGGKDHKDITSLLRIGKTLKIGEDT
FEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRAEKLDHQSRIVYSFGISHE
HPGTFILTYIRSSNPHHEYIGLYPKGFKFRKRMFDNIDRLVAYFQKHIDDPIHESGPSIR
SVAAMVPMRSPANGGSSGGGWGGSGSNDGGWRGSSDRDHSRAGRNDRNGGRDGHPSGAPR
PYEGGGRGRGRGRGGRGSYHGNRDSGSRDGGDSSYGSKWSSDNKDSGHGSKWGSESSDNN
KEGNTGSWGSFPGAKVQNAPGEEAFPGGWGSTGGAGSSGGGWGDDASGGGGGGGSSGWGG
TGGDAGNDSKNNSKGWSDGGGGGGSGGGW
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggccggcagagctgtagtatcagacgaagaagaggagctcgaggttcaggatgacgag
agagaacaagaggaagaaggcgaggagctcgatgatggcgggggtggaggcggtgtcgat
gacgatgaagacgaagacgacgaggaaggacaagatgagtttgaggatgatggttttatt
gtcgagggtgacgaagacgaagaagaacctgaggaggaggacgatgaggagaggcataaa
aagaagaagagaaagaagagggagtcctttgaacttgatgacgatgactatgagcttctc
ttggacaacaatgttaaagttgcccgcaaggctgatagcaaaaagtttaagaggttgaag
aaggctcgtcgagatactgatgctgggcactctgggctttttgacgatgatgagttcctt
ggatctggaaaaggtgcaaggacagctcaggaacaagccaaacacactttatttggcgac
gatgatggaggaccggttgaggatatgccagaagaagatgagcagccagaagctgatgat
gtagacttggcagatgaggatgacatggccgattttattgtgtccgaagaagatgaaatg
gatgctgatgggatgcctgtcagacggatggacaaaaagaaaaagaagcataggcaagca
gctggagttctaccatcctcactgcaggatgcccaagatatctttggagatgttgaagaa
cttctggatatgcgtcgtagagctaatcttgaaaaagaccggtatgatgaaaatggccta
agaaaggagagaaacattggtgaagaatttgaacctaccattcttgctgagaggtatatg
actgagaaggatgaccgtatccgggatatcgacataccagaaagaatgcagatatccgag
gagagcacaggtccaccgtctactgatgctgaagccattgtggacgaggccaagtggata
aaaaaacatctagactctggtcaagttcccgggcttgtgaacatagcatctggagaagaa
atggagtatcatattagaaattttctgaacttcacacacgttcagaaacttgatctccct
tatattgctatgtaccgcaaagaggacatattcagtttgttgaaggatccagagacgggt
gaagatgccagtcatgataagcctgctttaaaatggcacaaggtgctttgggctgtccag
gacttggataaaaaatggttgcttcttcaaaagaggaagagtgctcttgatggatactac
aataaaaggttcgaggaagaatcccgcaggatatatgatgagacgaggctacgtttgaat
caacaactttttgaatcaattattggggctctgagagattcagaatctgaaagggaagtg
gatgatgttgacgcaaaatttaacttgcatttccctcctggtgaggctggggtagatgag
ggtcaatataaaagaccgaagcggaaatcatattatagcttgtgcaacaaagctggtttg
tgggaggttgccagcaaattcggtcatagttctgagcagtttggtgcagcgatctctttg
gctgttagggtggatgaacctgaggacccaacagagacaccggaggaagttgcctcaaat
tttacctgtgcaatgtttgattcgcctcaagctgtactcaaaggtgctagacacatggca
gcagttgagataagttgtgagccgtatgtgaaaaagcattttcgtaataattattttgac
aatgtggtggtgtcaacatgtcctacacctgatggaaatgttgtcatagacgctttccat
cagtttgcaggcgttaaatggctacgcaacaagccattgaacaaatttgaagatgcacag
tggcttcttattaaaaaggctgaagaggagaagctcctccaggtcacaattaaatggcca
gaggaacatcttaagaagctgataggtgatttggagcttctgtatactagcttggctgtg
agcaagctagcaaagccttggaatgaacagagaaggctgatattacaggatgctatttac
aatttcatactgccagcactggagaaggaagctagattgttgttgactagcagggctaag
aattggttgcttatggattatggaaaatgtctttgggataaagtttcggtggctccatac
cagcgtaaggaaagtgatcttagctcagatgaggaggcagctccaagggtcatggcctgc
tgttggggttatggaaagccaccgaccactttcgttatgttagattcctttggggaagtt
gttgatgtcctagtggctgggtcaatcagcttgaggtctcaaaatgttactgaccagcag
cgtaaaaagcacgatcagcagaatcttttgaagttcatgactgagcatcaaccgcaggtt
gtagttctgggggctgtgagcttgtcttgcacccggctgaaggatgatatatacgagatt
gtgttcaaaatggttgaggaaaatcctagagatgtgggtcatgagatggatgggctgagt
gttttctacggggatgaatctttgcctcgtctgtatgaaaattctcgtatatcatcggat
cagattcctggacataaaggtgttgtgagacggggtgttgcccttggacggtacctacaa
aatccattagccatggttgctaatctttgtggaccaggcagggaaattttgtcttggaaa
atcagttcttcagagagctttcttgaggatgatgagaagtatgggatggttgaacagatt
atggttgatgtcactaaccaggttgggattgatctcaatctatctgcacaccatgattgg
ttatttgctccattacagtttatttctggtcttgggccaaggaaagcagcgaccttacaa
aagtcacttgtgagagctggggcaatagtcacaagaaaagatttgttgactgcacatgga
cttgggagaaaggtatttattagtgctgctggttttctgcgtattaggcgtagtggttta
gctgttagtaccagccagttcgttgacgtcttggatgatactagaatacatccggagtcc
tatgctctagcacaggaaatggcaaaagatatttatagagaaattgtaggggacgataat
ttggatgatgatgatgcgattgatatggcaattgaaaaccttagagacagaccaagtgca
ttaaaatcttttaatgttgatgcatatgcaaaggatacagatcgattatctaaggtagag
accttgtatgccataaaactggagttaattcagggctttcaagattggcgtaaagcatat
gaagaacccaatcaagatgaagagtttaatatgatttctggggagactgatgccaccctg
ggtgaaggacgaattgttcaagctacagttcgtagggtgcaacctcaaagagcaatatgt
ggcttggaatcgggattaactggtatgctttccagagaagatttttcagatgactggagg
gattctgatttgaccgagaagttacatgaaggtgaaattcttacatgtaagatcaaatct
atcctgaaaaacagataccaagtgatcctgacttgtagagagaatgatatgagggatatt
ggccagagtgtagagagcgtggacccttactatcacgaagaccgcatcagcttaccgagc
gggcaagacaaggctcgcagggacaaggagcttgcgaaaaaacgtttcaagtcaaggatg
attgttcatcctcgtttccagaatataacagctgatgatgcgatggaactgttagcagac
aaagatcctggtgaaagtgtaatacgtccaagttcccggggtccgtcttatttgaccttg
actctaaaggtttatgacggtgtttttgctcacaaggatataattgaaggcggaaaggac
cacaaagacattacaagcttgcttcgtattggaaaaacgctaaaaattggagaggatact
tttgaggaccttgatgaggtcatggaccgttatgttgatccattggtcactcatcttaag
gctatgctgaactaccgtaagttccgaaaggggacaaaagcagaagttgacgaactcctt
cgagctgagaaattggaccaccagtcgagaatagtttacagttttggcatttcacatgag
caccctggcacctttatcctcacgtacattcgtagttcaaatccccatcacgagtatatt
ggtctatatccgaaggggttcaaattccgaaagaggatgtttgataacattgacaggctt
gtagcttatttccagaagcacattgacgatcccattcacgagtccggtccatcgattaga
tcagtcgctgctatggtgccaatgcgtagtccagcaaatggtggttcttctggaggtgga
tggggtggttcgggcagcaatgatggtgggtggcgagggtcttctgacagagatcattcc
agggcaggacggaatgatagaaatggtggccgtgatgggcatcccagtggagcaccaagg
ccatatgaaggagggggccgtggacgtgggcgaggtcgtggtggtcggggctcataccat
ggcaacagagacagtggcagcagggacggcggtgattccagctatggttcgaagtggagc
tccgataacaaagacagtgggcatggttccaagtgggggtccgagtcttctgacaataat
aaagaagggaacaccggtagctggggaagctttcccggtgcgaaagttcaaaatgctcct
ggtgaggaagcatttccaggtggctggggttctactggtggtgctggtagtagtggtggg
ggttggggtgacgatgccagtggtggtggaggcggaggtggaagcagtggctggggtgga
actggtggtgatgctggcaatgattctaagaacaactccaagggatggtctgacggtggg
ggaggcggtggcagtggaggtggctggtag
DBGET
integrated database retrieval system
