Spinacia oleracea (spinach): 110804739
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Entry
110804739 CDS
T05137
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110804739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110804739
Spliceosome [BR:
soe03041
]
Complex A
U1 snRNP components
U1 related factors
110804739
Complex B
110804739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
FKBP_N
Crust_neurohorm
SBP_bac_1
Motif
Other DBs
NCBI-GeneID:
110804739
NCBI-ProteinID:
XP_021866042
UniProt:
A0A9R0JF89
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Position
4:complement(185136376..185153956)
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AA seq
1006 aa
AA seq
DB search
MANNPQYSGGPGPPLRPPMVGSVGPPQNIPPPMPTQFRSVASMHPSQQFAPPSTQQYHSI
GPGIPGMNMGMPPSQNQQMQFAQPLQQVPARPIPPGHIPSMSQSVPLSNIQLNRPMSSGL
PQPMQNLQPPNNFPSASGGPGMAPLPAYATNPYPTSQYQPVSQMNFQSNSISGQPLSASG
NQDAATFTPLQQSGQPLPSITINSVVDSQPKPAEKSSSDWLEHTNNGRRFYYNKKTRQST
WEKPFELMTPIERADATTDWKEYMGPDGRKYFYNKVTKQSKWVIPEELKLAREHVEKASY
AVEVTGSSSVSTSQAGVKTPSNVDTNSCLPAIHSSPARVTPVAVVGVAQSPTVSSPGLAS
LPLKDPEVQKDALSTVDVSETVPVTADEQAASSDPTPLPINESNVIPTEEAVESLQNVQA
NEAEEDNKSTDIIGKTSVTTLEDKLVEPETLTYASKQEAKDAFKALLESANVESDWTWEQ
AMRLIINDKRYAALRSLGERKQAFNEYLTQKRKHEAEERRVKHRKAREDFRKMLEECSEL
TSTTRWSKVLHLVGNDERFKAIERGRDREDMFEEYVVELEKKEYTKQEEERQLNIMEYRK
FLESCDFIKANSQWRKVKDRLEGDLRCSQLDTMDQLKIFQEYVGDLEKEEEEQKRKQKEE
IRKSERKNRDEFRKLMEGHVSDGTLSAKALWREYHSKVKDSLVYVAVSSNNSGSTPKELF
EDVLEELKKQYEEDRIRIKDAVKSGKVALSSTWTLEDFKAAIEDEISSPAVSENNLKLVF
DELLERVKEKEEKEAKRQKRLGDEFFNLLCSLKDITVDSSWEDCLPLFEARDEFRSIEEE
AFSRQIFEEYLDQLKAKEEKDRKRKEEKAKREKERERDKRSRDKREKDRRRDRDRGKDRS
GRDEGDAELDIDDVSVSSQGRKSGRDKDKKHRKRHQDDENDSGLDKNGKDHSRSSHRHSS
ERKKSREQHTESDSESKHKKPKREQRNGSRRKGDNEELEDGELGNW
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaatcctcaatattctggtggaccgggtccgcctctccgtccccctatggtt
ggttcagttggcccccctcagaatattcctccaccaatgcctactcagttccggtctgtt
gcttcaatgcatccatctcagcaatttgctcctccatcaactcaacaatatcattctatt
ggccctggtattcctgggatgaatatgggaatgcctccatcacaaaaccagcaaatgcaa
tttgctcaaccattacaacaagtgcctgcaagacctatcccgccaggtcatattccttca
atgtcacagtctgtgccattgtccaacattcagttaaacaggccaatgtcttctggattg
ccccaacccatgcaaaatctgcagcctccaaataattttccgtctgcttctggcggtcca
ggaatggctcctcttccagcttacgctacaaatccgtaccctacatctcaatatcagcca
gtatctcaaatgaattttcaaagcaattctatttctgggcaacctttatcagcttctgga
aaccaggatgctgccacattcacaccgctgcagcaaagtgggcagcctctaccatctata
accataaattcagtagttgattctcaacccaagcctgcagaaaaatcttcttcggactgg
ttggagcacactaataatggaaggagattttactacaacaagaagacaaggcagtctacg
tgggagaaaccttttgaactgatgactccgatcgagagggctgatgcgactactgattgg
aaggagtatatgggccctgatggaagaaagtacttttataacaaagttaccaaacagtct
aagtgggtgattcctgaagagcttaagttggccagggagcacgtagaaaaggcttcttac
gcagtagaagttactggaagctcttctgtatccacctctcaagctggtgttaaaacacct
agcaatgtggatactaattcttgccttcctgctatacattcaagtccagctagagtgacg
cctgtggctgtggttggtgttgctcagtcaccaactgtatcatctcctggtttagcttcg
ttgcctcttaaggatcccgaggtacagaaggatgctttgtctaccgttgatgtcagtgag
actgtccctgtaactgctgatgagcaagcagcttcttccgaccctacacctttgccaata
aacgaatccaatgtgatcccaaccgaggaagctgtggagtctttgcagaatgttcaggcg
aacgaagccgaggaagataataaaagcacagatattattggaaagacgagtgttacgacc
ttagaagacaaattggttgagcctgaaactctaacttatgctagcaaacaggaggcaaaa
gatgcatttaaagctcttctcgaatctgcaaatgttgaatcagactggacttgggagcag
gctatgaggttaattattaatgacaaaagatatgcagctcttagatcacttggagaaagg
aagcaagcttttaatgagtacttgactcaaaaaagaaaacacgaagctgaggaaaggcgt
gtgaagcacagaaaagcaagggaggatttcaggaagatgttagaagaatgcagtgagctg
acgtcaacgacaagatggagcaaagtgttacatttggttggtaatgatgaacgtttcaaa
gccattgagcgagggagagatcgcgaggatatgtttgaagaatatgtggttgaattagaa
aagaaggaatacacaaagcaagaagaagaacggcaacttaatataatggagtacaggaag
tttctggaatcatgtgactttatcaaggcaaatagtcaatggaggaaagtgaaagaccgc
ttggagggtgatctaagatgttctcagcttgacacaatggatcaattgaaaattttccag
gaatatgttggcgatttggagaaggaagaggaggagcaaaaaagaaaacagaaggaggaa
attagaaaatctgaacggaaaaaccgtgacgaattccggaagttgatggaaggacatgtc
tctgatggcaccctcagcgccaaggcactttggcgggagtaccactcaaaggttaaagat
tcacttgtatacgttgcagtctcatccaataactcaggttccactcccaaagagctgttt
gaagatgtacttgaagagctaaagaagcagtatgaagaagatagaatacggattaaggat
gctgtgaagtctggaaaggttgccttatcttccacttggactcttgaagatttcaaggct
gcgatagaggacgagatcagctccccggccgtgtcagagaacaacttaaagctagttttt
gatgagttacttgaaagagtcaaagaaaaagaagaaaaagaggcaaaaaggcaaaagcgt
cttggagatgaattctttaacttgttatgttcactcaaggatataaccgtggattcaagt
tgggaggactgtctaccactatttgaagctcgagatgagtttaggtctatagaggaagaa
gctttctctaggcaaatttttgaggagtatcttgatcagttgaaggcaaaggaggagaaa
gatcgaaaaagaaaagaagaaaaggcgaagagagagaaggaaagagaaagagataaaagg
tctagggacaaaagggaaaaagataggaggcgtgacagagatagaggaaaggaccgaagt
ggaagggacgagggggatgctgaacttgatattgatgatgtttcggtatcaagtcagggc
agaaaatcaggaagggacaaggataagaagcaccgtaagcgccatcaagatgatgaaaat
gattcaggtttggataaaaatggaaaagatcattctagaagctctcataggcacagcagt
gagcgtaagaagtcgagagaacaacacacagagtctgacagtgaaagcaagcataagaaa
ccgaagagagagcaacgtaatggttctcgtagaaaaggagacaacgaggagctggaagac
ggggagctgggtaactggtga
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