Spinacia oleracea (spinach): 110804806
Help
Entry
110804806 CDS
T05137
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110804806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110804806
03019 Messenger RNA biogenesis [BR:
soe03019
]
110804806
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110804806
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110804806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
110804806
NCBI-ProteinID:
XP_021866105
UniProt:
A0A9R0JGJ7
LinkDB
All DBs
Position
2:complement(51791526..51816245)
Genome browser
AA seq
699 aa
AA seq
DB search
MEDTEGGLSFDFEGNLDTVPNIPTASNPVIQPDPNAAPSAGASVPTGGSAPVDQGSGQGN
RRSFRQTVCRHWLRSLCMKGDSCGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKQPGPPPPVDEVLQKIQQLTSYSYGASNRFFQQRNTNY
SQQADRSQFPQGTNSTNPGVVPKPSGTESSNIHQQLQQPHLAGQDQIQNLPSNSSNQTGR
TAAPLPQGITRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDTVEHVILIFSVNR
TRHFQGCAKMTSKIGETASGGNWKHAHGTAHYGRNFSVKWLKLCELSFNKTRHLRNPYNE
NLPVKISRDCQEMEPSVGEQLASLLYLEPDGELMATLIAAESKREEEKAKGVNTDNGAGN
PDIVPFDDNEEEEEEEESEEEEEEESFGQAPGVAIHGRGRGRGMMWPPNFPMGRGIRPMP
GMRGFPPGMMGVDGFAYGPGPGPGPGPDGFPMPDPFGMAPRPFVPYGPRFSGEFTNPAPG
MMFPGRPSQPGGGFGMMMGPGRGPFIPGGMGMGMGMGMGMGGRGGRPMGGMPPIFPPQPQ
GSNRGPKRDLRGSGTGNGNGNDWGETFGSGPDQGKLQDMSSGGRADDPSYQQGAEKFVSR
NNVTNDESESEDEAPRRSRHGEGKKKRRSVDGDVPALDP
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacagaagggggtttaagcttcgatttcgaaggtaacctcgacactgtccct
aatattcccactgcctctaatcccgtcatccaacccgacccaaatgctgccccttccgcc
ggagcctccgtcccaaccggtgggtctgcccctgttgaccagggatcagggcaaggtaac
cgccgcagcttccggcaaaccgtttgccgtcattggcttcgtagcctctgtatgaagggg
gattcttgcggtttccttcaccaatacgacaaatctcggatgccggtctgccgtttcttc
agattgtatggggagtgccgtgagcaggattgtgtttataagcacaccaatgaggatatc
aaagagtgcaacatgtacaaattgggtttttgtccaaatgggccagactgtcgttaccga
catgcaaagcagcctggacctccgcctcctgttgatgaagtccttcagaagattcagcaa
ctcacctcttacagttatggtgcatcaaatagattttttcaacaacggaatacaaattat
tctcagcaagcagatagatcacagtttccacaaggtacgaacagcacaaatccaggtgta
gtcccaaaaccttcgggaacagagtcctccaacatacatcaacaattgcagcagcctcat
cttgctggccaggaccaaatacaaaatcttccaagtaattcatccaatcaaacaggcagg
acagcggctccactgcctcaagggataactaggtattttattgtgaagagctgcaatcgt
gaaaacttggagctatcagttcaacaaggtgtgtgggctactcaaagaagcaacgaagcc
aaactgaatgaagcctttgataccgttgagcatgttatcttaatcttttctgtcaaccgt
actcgacattttcagggctgtgcaaagatgacatcaaaaattggtgagactgctagtggg
ggaaactggaagcatgcgcatgggacggctcattatgggcggaacttttctgtcaaatgg
ttaaagttatgtgagctatctttcaataaaactcggcatttgaggaatccgtacaatgag
aatttgccagtgaagattagtagagattgccaggagatggagccttctgtcggggagcag
ttggcttccttgctttatcttgaaccagatggtgaacttatggcgactctaatcgcagcg
gaatccaagcgcgaggaggaaaaagcgaaaggagtcaacacagataatggagctgggaat
ccagacatagttccttttgacgacaatgaagaggaggaagaggaggaagaaagtgaagaa
gaagaagaagaagagagttttggccaggcacctggtgttgctattcatggaagaggaaga
ggaagagggatgatgtggccgccaaactttcctatgggtcgaggcatacgtcctatgcca
gggatgcggggttttcctcctggcatgatgggggtggatgggttcgcgtatggacctgga
cctggacctggacctggacccgacggctttccaatgcctgatccttttggaatggctcct
cgccctttcgtgccctatggcccaaggttctcaggtgaatttacaaatccggcacctggt
atgatgtttcctggtcgaccttcacaacctggtggtggatttgggatgatgatgggccct
gggcgtggtccattcatccctggaggaatgggtatgggtatgggtatgggtatgggtatg
ggtgggagaggtggtcggccaatgggtggtatgcctcctatctttcctccccaacctcaa
ggtagcaatcggggtcctaaaagggatttgaggggatctggtactggtaatggtaacggt
aatgattggggtgagacatttggatcgggtccagatcaagggaaattgcaggatatgagt
agtggtggacgtgctgatgacccatcatatcaacaaggtgctgaaaaatttgtatctcga
aacaatgtgacaaatgatgagagtgaaagtgaggatgaggctcctaggcggtcaagacat
ggcgagggaaagaaaaaacgccgaagtgtggatggtgatgtgcctgctttagacccataa
DBGET
integrated database retrieval system
