Spinacia oleracea (spinach): 110805228
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Entry
110805228 CDS
T05137
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110805228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110805228
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110805228
Spliceosome [BR:
soe03041
]
Complex C
Other components
Step II factors
110805228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
DUF1192
AAA_16
Sigma54_activ_2
TsaE
PhoH
ABC_tran
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
110805228
NCBI-ProteinID:
XP_021866526
UniProt:
A0A9R0JET1
LinkDB
All DBs
Position
2:7700653..7706078
Genome browser
AA seq
1224 aa
AA seq
DB search
MAAVEESKGDGLKKLEYLSLVSKVCSELETHVGVGDKVLAEFITDLGHKCETVDEFDADL
KKNGAEMPDYFVKTLLTIIHAILPPKPKNEGGDGNNGSNFAGLSIADGKARVKELEREIA
AEAEERRRKEEKNGGDEGGPSRDRRGKDRDRDRGRDRDREGGRDRHRDREGGRDGDRHRD
REGGRDGDRDREGDAGRRGRYDNSDRYRERDDDRYDDRRVKEDRVVEDRRRRDRYEDGDD
VEEEVRRGGDNYQKRNEKQQQSDEIELLTRVYKGKVSKVMSMGCFVQLQDFRGKEGLVHV
SEIANRRIADPKDVVKRGQDVYVKVISVSGQKLSFSMKDVDQDSGKDLLPLKKKKSSQDD
TTLRVNPSSGGIGTTTRIGFSGIPIVEETVSSSSRRPLKRMSSPEKWETKQLIASGVLSV
KEFPSFDDEGDGMLYQEEGAEEELEVELNEDEPAFLQGQTRYSADMSPVKIFKNPEGSLS
RAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAY
DMPEWKKEAIGKTVGFGQKSKLSIQEQRKSLPIYKLKKELIQAVHDNQVLVVIGETGSGK
TTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP
DTVIKYMTDGMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLINRRPDLRLI
VTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEG
DVLLFLTGQEEIDFACQCLFDRMKALGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRK
VVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLIITPISQASAKQRAGRAGRT
GPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLTMKAMGINDLLCFDFMDPPSPQAL
ISAMEQLYSLGALDEEGLLTKLGRKMAEFPMEPPLSKMLLASVDLGCSDEILTIIAMITT
GNVFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRR
AQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVY
IHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVSDPTKMSKRKR
QERIEPLYDRYHEPNSWRLSKRRA
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagttgaggaaagcaaaggcgacggactgaagaaattggaatatctctccctc
gtttcaaaggtatgctccgaacttgaaactcatgtcggagtcggcgacaaagttctcgcc
gaattcatcactgacctcggccataagtgcgagacagtcgatgaattcgatgccgatttg
aagaaaaacggtgctgaaatgcctgattactttgttaaaactttgttgacaattattcat
gctattttacccccgaaacctaaaaacgagggtggtgatgggaataatggttccaatttt
gccgggttgtcgattgctgatgggaaagctagggttaaggagttggagagagagattgcg
gcggaggcagaggaacggcggaggaaggaggagaaaaacgggggcgatgagggtggtccg
agtcgggatcgccgcggtaaggatagagacagggataggggtagggatagggatagagag
ggcggcagggataggcatagggatagagagggtgggagggatggggataggcatagggat
agagagggtggtagggatggggatagggatagagagggagatgcaggtagaagaggaagg
tatgataactctgataggtatagagaaagagatgatgatcggtatgatgaccgaagagtg
aaggaagatcgtgtggtggaggatcgacgaaggagggataggtatgaagatggtgatgat
gttgaggaggaggttagaaggggaggtgataattaccagaagaggaatgagaagcagcag
caatctgatgaaattgagttgttgactagggtttacaagggaaaagtttcgaaagttatg
tcgatgggttgttttgttcaattacaagattttaggggaaaggaagggttggttcatgtt
tctgagattgcaaataggcgaattgcggatcctaaagatgttgtgaagaggggtcaagat
gtttatgtgaaggtgatatcagtatcggggcagaagttgagtttctcaatgaaggatgtg
gatcaagatagtggaaaggatttgctcccattgaagaagaagaaaagttcacaggatgat
actactttaagggtaaatccgagtagtggtggtattggaacaaccactaggattggtttt
tcggggattccaatagtggaggagactgtgtctagttcttcacgtcgcccattgaagcgt
atgagttcgccagaaaagtgggagacgaagcagctgattgcgtcaggggttcttagtgtg
aaggagtttcccagctttgatgatgaaggtgatgggatgctttatcaagaagaaggtgca
gaggaagagcttgaggtagaattaaatgaagatgaacctgcttttctacaggggcagaca
cgatactctgctgacatgtcacctgttaagatctttaagaatccagagggctccttgagt
cgtgcagccgctctccagtctgctcttataaaggaaagaagagaagttcgagagcaacaa
cagaggacaatgcttgattcgattccaaaggatcttaatcgtccttgggaagatccaatg
ccggagactggggagagacatcttgcacaggaattgagaggtgttggcttatcagcatat
gacatgccagaatggaagaaggaagctattggtaagactgttggatttggtcagaaatct
aagctgtcaatccaggagcaaaggaagagtttgcccatctacaaattaaagaaggagctg
attcaggctgtgcatgataatcaggttctggttgtgattggtgagactggatctggaaaa
acaacccaagtaactcagtatcttgcagaggcaggttacaccactaaaggaaaaattggg
tgtacccagcctcgtagagtggctgcaatgtctgtggccaagagggttgctgaggaattc
ggttgtcgattaggggaggaagttggatatgctatccgttttgaagattgtactggtcct
gatactgtgattaaatatatgacagatggtatgcttcttagggagattctgattgatgag
aatcttagtcaatattcagttgtcatgcttgatgaagcacacgagagaacaatacataca
gatgtcctttttgggttgctgaaacagctcattaatcggaggcccgatcttcgtttgatt
gtcacttctgctacactggatgcggagaaattttcggggtatttctttaactgtaatatc
ttcacgattcctggcagaacctttcctgtggagatattgtataccaagcaacctgagact
gattacttagatgctgctttaatcacggtgctacagattcacttgacagaaccggaaggt
gatgttctccttttcttgactggacaggaggaaattgatttcgcgtgccagtgtctcttt
gatagaatgaaagcccttggcaaaaatgttcctgaactgataattctcccagtttacagt
gcccttcctagtgaaatgcaatctaggatctttgaccctgctcctcctggaaagagaaaa
gtagttgtggctacgaatattgctgaagcttctttgaccattgatggtatattttatgtg
attgaccctggatttgcaaagcaaaatgtgtataatccaaaacaagggcttgattctcta
attataaccccaatttcacaagcatcagccaagcagcgagcaggtcgtgctgggcgtact
gggcctggaaaatgctaccgtctttatacagagagcgcatatcggaatgaaatgtctccc
acctcaattccggagattcagagaattaatcttgggatgactacattgactatgaaagct
atgggaattaatgatctgctgtgctttgattttatggatccaccttctccgcaagctctg
atttctgccatggagcaactgtatagtctgggagctttggatgaggagggccttctgacc
aaattgggtaggaagatggcagagttccccatggaaccaccattgtctaagatgcttttg
gccagtgtggaccttgggtgcagtgatgagattttgactataattgcaatgattacaact
ggcaatgtattctacagacctagggagaaacaagcacaggcagatcagaagagggctaag
tttttccagcccgagggtgatcatttgacgctgcttgctgtctatgaggcctggaaagct
aaaaacttttctggaccatggtgctttgaaaattttatccagtctcgttctttgcggagg
gcacaagacgtcaggaaacaacttctcagtattatggacaagtataaattggatgttgtg
agtgctgggaagaacttcaccaaaataaggaaagcaatagctgctggatttttctttcat
gcagccaggaaagatccgcaagaaggttatagaaccctggttgaaaatcagcctgtttac
atccaccctagcagtgcattatttcagagacaaccagattgggtgatttaccatgaattg
gttatgaccacaaaagagtatatgagagaggtgactgttgtagatccaaagtggcttgtt
gaattggctcctagattcttcaaagtgtcagatcccacaaaaatgagcaagcggaagcgg
caagaacgtattgagccactttatgacagatatcatgagcctaactcttggcgtttgagc
aaaagacgtgcttaa
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