KEGG   Spinacia oleracea (spinach): 110805478
Entry
110805478         CDS       T05137                                 
Name
(RefSeq) protein PAT1 homolog
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110805478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110805478
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110805478
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     110805478
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 110805478
NCBI-ProteinID: XP_056693453
UniProt: A0ABM3RCX5
LinkDB
Position
1:100004502..100012930
AA seq 768 aa
MEGNLGDGLFDASQYEFFGNNIVEEVELGGLDDEEIIPVGGIEDDYQLDQEEVDVIGSFS
DIDDLGGAFSKLNRTISEPRAGFISDRGSRESSSAAEWTQDIDYSTWYDQQVYHPEDGPE
SKKWSSQPYGSSVRAAESNPLHRTSSYPEPPPQLLPQRHQNFSTEPIPMPRSSFPSYPSS
GSRPQILSPNQHSHANSPYLSGGPQMTLHSQTSYPSPMTGLPHGSHLAANLPHFSPPGHS
MDSRPPGQWLNRANLMNNMLQHQLPHQNGLPPQMISQQQQQQQQNRLHHPGPPPYGNLTG
VHSQLIGPHMSPSPPMLNKFDAMMGLPDFRDQRPKSSQRNRQNLRYPQQGFNTIGQRNDG
GWPVYRSRYMTADELENILRMQLAATHSNDPYVDDFYHQACLFKKSASARLKHHFCPTQL
RDLPSRARPTDEPHPFLQVEALGRIPFSSIRRPKPLLEVDPLNSTSSSSGEKKVIDKPLE
QEPMLAARVTIEDCLCLLLDIDDIDRFLRFNQFPDGGNELRQRRQSQLEGLAASLQLVDP
LVKEDSQAPKDDLVFLRIVSLPKGRKLLAKFLGIVSSGSELHRIVCMAIFRHLRFLFGVY
PSDQAAAEVTAYLVKVVSSCVNEMDLNGLGACLAAVVCSSEQPPLRPIGSSAGDGASVVV
KSVLDRAAELLRDTHTHAGSSYNLANPAFWQASFNEFFNLLLKYCLSKYDSIVQPMQMLA
MPNLATDLAKAIKKEMPVELLRASLPHTSEHQRKLLLDFAHRSVPLGG
NT seq 2307 nt   +upstreamnt  +downstreamnt
atggaagggaatctaggtgatggattatttgatgcatctcaatatgaatttttcggcaat
aatattgtggaagaagtggagttgggagggcttgatgatgaggaaattatacctgtaggt
ggaattgaagacgattatcaactcgaccaagaagaggttgatgtcataggatctttttct
gatattgatgatcttggtggcgctttttcaaagctgaacaggacaatcagtgaacccaga
gctggatttattagtgatagggggtccagagaaagttcttctgcagctgagtggacacag
gatattgattattcaacctggtatgatcagcaagtatatcatccagaagatgggcctgaa
agcaaaaaatggtcttcacagccatatggttcctcagttcgtgctgccgagtcaaaccca
ttgcacagaacatcatcatatcctgagcccccacctcagcttcttcctcaacgtcatcaa
aatttctccactgaaccgatccccatgcccaggtcttccttcccctcctatccttcttct
gggagcaggccacaaatactttcaccaaatcagcactcacatgcaaacagtccatacttg
tctggtggaccacaaatgacgctgcattcacaaacatcttatcctagtcctatgactggc
ttacctcatggttctcatcttgctgcaaatctacctcacttctcccctcctggccattcg
atggattctcgccctcctggccaatggttgaatcgggccaacctcatgaacaacatgttg
cagcaccaattacctcatcaaaatggattgccgcctcagatgatatctcaacagcagcag
cagcagcagcaaaatcgattgcaccatccaggtcctccaccttatggtaatctaactggg
gtacattctcaacttattggtccccatatgtctccatcaccgcccatgttgaacaaattt
gatgcaatgatggggctccctgatttcagagatcaaagacctaaatcttcgcagagaaat
agacaaaatttacggtacccccaacagggtttcaataccattggtcagaggaatgatggt
gggtggccagtatataggtcaaggtatatgactgcagacgaacttgaaaatattcttagg
atgcagttggctgcgacacacagcaatgacccatatgtagatgatttctaccaccaagct
tgtcttttcaaaaaatctgctagtgcaaggttgaaacatcatttttgccccactcaactc
agagatcttccttcaagagctcgtcctactgatgaaccccatccgtttctccaagttgag
gcattgggaaggattcctttctcatctatccgcaggccaaaacctcttctcgaagttgat
cccctgaattcaactagctctagcagcggtgaaaagaaagtaattgataaaccccttgaa
caagaacctatgctggcagcaagagtgactatcgaggattgtctttgtcttcttcttgat
attgatgatatagaccgtttccttagatttaatcaattcccagatggtggtaatgaactg
agacaaaggcggcaaagccagctagaaggattagcagcctcactacagctggtagatcca
cttgttaaagaagatagtcaagctccaaaggatgatcttgtattcctacgaatagtttct
ctccccaaaggacggaaacttcttgcaaagttcctaggtattgtttcctctggaagcgag
ctccaccggattgtttgcatggccatttttcgtcatttgagattcttgtttggtgtgtat
ccatctgatcaagcagctgctgaggtgactgcttaccttgtgaaagttgtatcgtcttgt
gtaaacgagatggatcttaatgggctcggtgcttgtctcgctgcagttgtttgttcgtca
gagcagcctccactgcggcctattgggagttctgctggagatggtgcctctgttgttgtg
aaatcggttcttgacagagctgctgagttacttagagacactcatactcatgctggtagc
agctataatttggccaatccagccttttggcaggcatcattcaatgaatttttcaatcta
ctcctcaaatattgcttgagcaagtatgatagtatagtgcagccaatgcaaatgctggca
atgccaaacttggccactgacttggctaaggctattaagaaggaaatgccagttgagctg
ttacgagcaagtcttcctcatactagtgagcaccaacggaaactcttactggattttgca
catcgttctgtgcctttaggtggttga

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