Spinacia oleracea (spinach): 110805686
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Entry
110805686 CDS
T05137
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110805686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110805686
03012 Translation factors [BR:
soe03012
]
110805686
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110805686
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110805686
Translation factors [BR:
soe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110805686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
PhoH
Myosin_head
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
110805686
NCBI-ProteinID:
XP_021867003
UniProt:
A0A9R0JHE3
LinkDB
All DBs
Position
4:87274217..87302764
Genome browser
AA seq
1156 aa
AA seq
DB search
MHSKLGLLLLCGKSIYSLSKCRNSTARYALFNYLTSTLSNSSIISHNLGISPCSYRFLSS
HRQFSGYAVEQFSDDEYECDFETNTASSSVANVDEWKWKLSMLLRNEQEQEIVSRDKRDR
RDFEQISNLAKRMGLYCEVYGKVVVASKAPLPNYRPDLDDKRPQREVAIPLSVQRRVEGL
LQEHLDRIQLDSGKSSDGALECKTSNADSNITLGENPNDMMDDSVMERILQRRSLQLRNM
QRTWQESPEGRKMLEFRKSLPAFSEKERLLQAIAKNQVIVISGETGCGKTTQLPQYIIES
EIESGRGAFCNIICTQPRRISAMAVAERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFC
TSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLN
AELFSNYFGGAPMIHIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKVWKTQKQL
VPRKKKNQITTLVEDALKNSSFENYTPRARDSLSCWSPDCIGFNLIEAVLCHICRKERPG
AVLVFMTGWEDISCLKEQVKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNVRKIV
LATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISKASMRQRRGRAGRVQP
GECYHLYPRCVYDAFADYQLPELLRTPLNSLCLQIKSLQIGSIAEFLSSALQPPAPLAVQ
NAIGFLTRIGALDENEHLSNLGRYLAMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVK
DPFLLPQDKKDLAGIAKARFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQT
LQAIHSIRKQFSFILKDAGLIDEDVRSNNKLSHNQSLVRAVICSGLFPGIASVVHRETSM
SFKTKDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVLLRDSTGVSDSILILFGGAL
SSGTQPGHLKMLDGYVEFFMDLNTAECYSKLKEELDKLLQKKLEDPTIDILKEGKYLMFA
VQELISGDQCEGRFVFGRESRKAKDPVDSNRFSKDGMNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPQRNKHLAEKDAAIEALAWLTHTDNKNDNQDDNSPPDVT
DNMLKLLGKRRKSKRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcattcaaagcttggactccttttgctctgcggaaaatcgatctattctctatccaaa
tgcagaaattcgactgcaagatatgctcttttcaattatctgacttctacactatctaat
agttcaataatcagccataacctcggcatttcgccgtgttcttatcgcttcctatcttca
catcgtcaattttccggttacgctgttgagcagttctccgacgatgaatacgagtgcgat
tttgagacgaatacggcatcttcttcagtggcaaatgttgatgagtggaaatggaaactt
agcatgttgttacgcaatgaacaagagcaagagattgtatctagagacaaaagggatagg
agagattttgagcagatatcaaatcttgctaaaaggatgggactttactgtgaggtatat
gggaaagtggttgttgcaagcaaggcccctcttcccaattatcggccagaccttgatgat
aagcggccacaaagagaggtggcaattccgttaagcgtacaaaggagagtggaaggttta
cttcaggagcatctagataggatacagttggattctggtaaatccagtgatggtgcactg
gaatgtaagacctctaatgcagatagcaacataactttgggtgagaatccaaatgatatg
atggatgattcagtaatggaaaggattcttcaaaggaggagcttgcagttgcgtaatatg
cagaggacttggcaggaatctcctgaaggtagaaagatgctggaattccggaaatcactg
cctgcattcagtgagaaggagaggcttcttcaagcaattgcaaagaaccaagtaattgtg
atttcgggtgagactggatgtggtaagaccacccaacttcctcagtatataatagagtca
gagatagagtcaggtcgtggtgccttctgtaacataatctgcacacaaccccgaagaata
tctgctatggcggtcgctgaaagagtctccactgagagaggagaacctcttggtgaatct
gttggctataaagtccggttagaaggaatgaaagggaaaaatacccacctacttttttgt
accagtggtattttgttgcggcgcttgctgagtgatcgcaacttgaatggcgtgacccat
gtctttgtggatgaaattcacgagcgaggaatgaacgaagactttttattgatcgtgtta
aaggatcttctccctaggcgtcgggatttgagattgattctgatgagtgcaacattaaat
gcggagctgttttccaattactttggtggagccccaatgattcatataccaggattcaca
tatcctgtgagggctcatttcttagaagatgtactggaaattacaggatataaattgacg
tcattcaaccaaattgatgactacggccaagaaaaagtctggaaaacacaaaaacaattg
gtcccaaggaagaaaaagaatcagattaccactcttgttgaggatgctttgaaaaattca
agctttgaaaactacactcctcgtgcacgagattctctgtcatgttggtcgccggattgt
attggatttaatctcattgaagcagtcttgtgtcatatatgccggaaggaacggccaggt
gctgttttggttttcatgactggatgggaggatattagttgtttgaaggaacaagttaaa
gcccaccctttgctaggagacccaaacagggttttgctacttacttgtcatgggtcaatg
gctacatctgaacagaaactgatatttgaaagaccacccccaaatgtgcgtaaaatagtg
ttggctacaaatatggcagaggctagcatcacaatcaatgacgtagtttttgttgttgat
tgcgggaaagctaaagagactacttatgatgctctgaacaacaccccgtgtttactgccc
tcttggatatctaaggcttctatgcggcaacgtaggggacgagctggtcgtgtgcagcca
ggcgagtgctatcatttgtatcctagatgtgtatatgatgcttttgctgactaccaactc
cctgagctactgagaactccactaaattctctctgtttgcaaataaaaagtttgcaaata
gggagtattgcagaatttttgtcatcagctctacagccaccagcaccattggcagtccaa
aatgcaattggtttcctgacaaggataggagctttggatgagaatgagcatctttcgaat
cttgggagatacttggcaatgctgccagtggatccaaaacttggaaagatgcttataatg
ggtgccatcttccgctgctttgaccctgtcctgacaatagtagcaggcctcagtgtcaag
gacccctttctgttacctcaagacaaaaaggatttagcagggatagcaaaggccagattt
tctgctaaggattacagtgatcatatggctcttgttcgtgcatatgaaggctggaaagat
gctgagcgagaaggatcagcttatgaatactgctggagaaatttcctctctgcgcaaact
cttcaggctatccattccattcggaagcaatttagtttcattttaaaagatgctggctta
atagatgaagatgtgaggtcaaataataagttaagtcataatcaatcattggtccgtgct
gtcatatgctctggcctgtttcctggcatagcatctgttgtgcacagagagacgtcaatg
tcatttaaaactaaggatgatggacaagttctactgtatgcgaattcagtgaatgcacga
taccagacaattccctatccttggctggtttttggagaaaaagtaaaagtcaacactgtt
ttactacgtgactcaactggtgtctctgattctatactgatcctctttggtggtgctctt
agcagtggtacacagcctgggcatctaaaaatgttagatggatatgttgaatttttcatg
gatctgaacacggccgaatgctacagcaagctgaaggaagagcttgataagcttctacaa
aaaaagcttgaagatcctacaatagacatcctgaaagaagggaagtacctaatgtttgcc
gttcaagagctaatatcaggagatcaatgtgaagggagatttgtatttgggcgtgaaagc
agaaaagctaaggatcctgtagatagcaatagattctcgaaagatggaatgaacccgaag
agcttgctgcagactctattaatgagagctggacactcgccccctaaatacaaaacaaaa
caccttaaaaccaatgagttcagggcactggtggaattcaaagggatgcaatttgtggga
aagccacagaggaacaaacatcttgcagaaaaggatgctgctatagaagctttggcatgg
ttgactcatactgacaacaaaaatgacaaccaggatgataattccccaccggatgtcact
gacaacatgctgaaacttcttggaaaacgtagaaaatctaaacgacgttga
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