Spinacia oleracea (spinach): 110806136
Help
Entry
110806136 CDS
T05137
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110806136
09123 Folding, sorting and degradation
03018 RNA degradation
110806136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110806136
03041 Spliceosome [BR:
soe03041
]
110806136
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110806136
mRNA degradation factors
5'-3' decay
Lsm complex
110806136
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110806136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
110806136
NCBI-ProteinID:
XP_021867463
UniProt:
A0A9R0JG55
LinkDB
All DBs
Position
4:38326366..38334703
Genome browser
AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDAE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaacaatccatcccagctcctcccctcagagttgatagacagatgcataggc
tctaagatttgggtgattatgaagggtgataaggagcttgttggtactcttcgaggtttc
gatgtctatgttaacatggtgcttgaagatgttactgaatatgaaataactgctgaagga
cgaagaatcacaaaacttgatcagattctgctaaatggaaacaacattgccattttggtt
cctggtggttcgcctgatgcagaatga
DBGET
integrated database retrieval system