Serratia odorifera: NCTC11214_00454
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Entry
NCTC11214_00454 CDS
T06612
Symbol
sbcC
Name
(GenBank) Nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_00454 (sbcC)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC11214_00454 (sbcC)
Archaeal homologous recombinant proteins
NCTC11214_00454 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
SMC_N
AAA_29
ABC_tran
cobW
AAA_21
NTPase_1
nSTAND3
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
VDZ51951
UniProt:
A0A3S5D6R7
LinkDB
All DBs
Position
1:400652..403909
Genome browser
AA seq
1085 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFSSEPFASNGLFAITGPTGAGKTTLLDAVCLALYHQTPR
LQVSPSQNELMTRHTAESLAEVEFEVKGIGYRAFWSQRRAKNDPNGNLQAPKVELALLAD
GKIVADKVRDKLELIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTEI
YGQLSERVFEQHKQARLDLDALQQRASGIALLDDEQRQQLETQLNALRSEEAALNQQALQ
VQQALNWLQQWQQAQNKQQEYQQRLSEVQQQQRQAEPQLQALARSEPAEKLRPLFNEHQR
CHSEHQTLQQQIAQLEQQRQQHNATLAPLQQALEQARAEQQKQTLLRQQQQQLIDEQVVP
LDHQIAQLEKNRHELRQTLDDAERQCAQQQRTLATINAERSQLAAQAEQHQGTSVSLNQA
LAAQQQRQQALEAQTPLATLRQRLSQLGELRPTRQQLYSLSTLSQQISQRLQQQRQEFND
GQQQLSQLEPQLEQARLLYQQQKSLEQEVEKTLRLEQQIVSLEAERRRLQPGEPCPLCGS
TKHPSIGHYETLQPSETAQRLDGIKTQTEVIYKQGVELRARHDSLRQQLQRQQQAITLDE
QQLAAHQQRWQQLTATLAFSFGLQDSQRLHDWLEQCENQEREGGQLLTQHEQAALAVQQA
KDALVTLQTQQQQAEQQSALLNERCNLLEKNLAETQRQQQRLQQQWQQAQEQHATLRAQR
LTLFGEQQVAQVRENLRVRQAADEQSSSQASERLQQAQEQRDRLTGQLAGLQQQLAQLAE
RLQHAQTRWQQALAASEFSDVTAFSAALLDEAERQRLQQHKEHLQQRRVEADALLAQAIL
TLEQHQQQQPNALADPRSDGEALAAQHQALLQQLKTLQFRQGELRHQLVSDAQRRNDQQA
LLAQIAQSQQQYDDWSLLNQLIGSKEGDKFRKFAQGLTLDHLVYLANNQLGRLHGRYLLQ
RKTSDALELLVVDTWQADALRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEG
FGTLDAETLDTALDALDSLNASGKTIGVISHVEAMKERIPVQIKVKKVNGLGVSRLEAQY
QVEHP
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcttgagcctacggctaaaaaacctcaactcgctgcagggtgaatggaaaata
gatttcagcagcgaaccctttgccagcaatggcctgttcgccattaccggcccgaccggt
gctgggaaaaccaccctgctcgacgcggtgtgcctggcgctgtatcaccaaacaccgcga
ctgcaggtttcccccagccaaaacgaactgatgacgcgccacaccgccgaatcgctggcc
gaagtggaattcgaagtgaagggcatcggctatcgcgctttttggagccagcgacgggcc
aaaaacgatccgaacggcaacctgcaggcacccaaagtggagctggcactgctggccgac
ggcaagatcgtcgccgacaaggtgcgcgacaagctggagctgattgccgccatcaccgga
ttggattttggccgttttaccaagtcaatgatgctgtcgcaagggcagtttgccgcattt
ctcaacgccgatgccaacgatcgcgccgaactgctggaggaactgaccggcaccgagatt
tacggccagctgtcagaacgggtatttgaacagcataaacaggcacggctggatctcgac
gccctgcaacaacgcgccagcggcatagcactgctggacgatgaacaacgccaacagctg
gaaacccagctcaacgcattacgcagcgaagaagccgcgctgaaccaacaggcgctgcag
gttcaacaggcgctgaactggctgcaacagtggcagcaggcgcagaacaaacagcaggaa
tatcagcaacggctgagcgaggtgcagcaacaacagcgccaggctgaaccacagctgcaa
gcgctggcgcgcagcgaaccggcagagaaactgcgaccgctgttcaacgaacaccagcgc
tgtcacagcgagcatcagacgctgcaacaacagattgcccaactcgagcaacaacggcag
cagcacaacgccaccttggcgccattgcagcaggcgctggagcaagcgcgagccgagcaa
caaaaacagacgttactgcgccagcagcaacagcaactgatcgatgagcaagtggtgccg
ctcgatcaccagattgctcaactagaaaaaaatcgccacgaactgcgccaaacgctcgac
gatgccgaacggcagtgcgcgcagcagcaacgcacgctggcaacgatcaacgccgaacgc
agccagttggcggcgcaggcggaacagcatcaaggcacatcggttagtctgaaccaggcg
ctggcagcgcagcagcaacggcaacaggcgctggaggcgcaaacaccgctggcaacgctg
cgtcagcgcttaagccagctcggcgaactgcggccgacgcgccaacagctctatagcctc
tcgacgctgagccaacagattagccaacggctgcaacagcagcgacaggagttcaacgac
ggtcagcagcaactgagccagttggagccacagctggagcaggcccgtctgctctatcaa
cagcaaaaatcgcttgagcaggaagtggaaaaaacgctgcggctggagcagcagatcgtc
agtctggaagccgagcgccgtcgtctgcaacccggcgagccctgtccgctgtgtggctcg
accaaacatccgtcgatcggccattatgaaacgctgcaaccgtcggaaaccgcccaacgg
ctggacggcatcaagacgcagaccgaggtcatttataagcagggcgttgagctgcgtgct
cgccatgacagcctcaggcaacagctacagcgccaacagcaagccatcaccctggatgaa
cagcagttggcggcgcatcagcagcgctggcagcaattgaccgccacgctggcgttcagt
ttcggtttgcaggatagccaacgtctgcacgactggctggagcaatgtgaaaaccaagag
cgtgaaggcggccaactgctgacccagcatgaacaggcggcgttggcggtacagcaggcc
aaggacgcgttggtcacgctgcaaacgcaacagcaacaggccgagcagcagagcgctttg
ctcaacgaacgttgcaacctgctggaaaaaaacctcgctgaaacacaacgccagcaacaa
cggttgcaacagcaatggcagcaggcgcaggagcaacacgcgacgctgcgtgcgcaacgg
ctgacgctgttcggcgagcagcaggtcgcgcaggtgcgcgaaaacctgcgggtacggcaa
gccgccgacgagcagagcagcagccaggccagcgagcgcttgcagcaggcacaggaacaa
cgcgatcgcctgaccggccagttggccgggttgcagcagcagctggcgcagttggccgaa
cgcctgcaacatgcgcagacgcgctggcaacaggcattggccgccagcgaattcagcgat
gtaacggcctttagtgccgccttgctggacgaggccgaacgccaacgcctgcaacagcac
aaggagcacttgcagcaacgccgcgtcgaggctgacgcgctgctggcacaggcgatacta
acgctggaacagcatcaacagcagcagccgaacgcgcttgccgacccgcggagcgacggc
gaagcgctcgccgctcagcatcaggcattactgcaacaactgaagacgttgcagttccgc
cagggcgaactgcgccatcagttggtaagcgatgcccaacgccgcaacgaccagcaggca
ctactggcgcagatcgcccaaagccagcaacagtacgatgactggagcctgctcaatcag
ttgattgggtcaaaagaaggcgacaagttccgcaagtttgcgcaagggctaacgctcgat
catctggtgtatctggccaataatcagcttggccggctgcatggccgctacctgctgcaa
cgcaaaaccagcgacgcgctggaattgctggtggtggatacctggcaggccgacgcgttg
cgcgatactcgcaccctgtccggcggcgaaagcttcctggtcagcctggcgctggcgctg
gcgttgtccgatctggtcagccataaaaccagcatcgattctctgttcctggacgaaggt
ttcggcacgctggacgcagaaacgctggataccgcgctggatgcactcgacagcctgaac
gcctccggcaaaaccatcggcgtgatcagccacgtcgaggcgatgaaagaacgtattcca
gtgcagatcaaggtaaagaaagtcaacgggctgggagtaagccgcctcgaggcgcaatac
caggtggaacatccctga
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integrated database retrieval system
