Serratia odorifera: NCTC11214_01103
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Entry
NCTC11214_01103 CDS
T06612
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sof
Serratia odorifera
Pathway
sof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11214_01103 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_01103 (deaD)
03009 Ribosome biogenesis [BR:
sof03009
]
NCTC11214_01103 (deaD)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11214_01103 (deaD)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11214_01103 (deaD)
Ribosome biogenesis [BR:
sof03009
]
Prokaryotic type
rRNA helicases
NCTC11214_01103 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
VDZ53539
UniProt:
A0A3S4FJG6
LinkDB
All DBs
Position
1:complement(996992..998920)
Genome browser
AA seq
642 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLAKLQPEEELDIE
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGGDRRRDSRDGGERPQRRERRD
VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEIL
NHFTRTRILNKPMNMQLLGDAQPHERRERREGGNAGGERRGNGRPFNGERREGAPRRSFG
ERREGGNAAGGERRGGGNFNRDRAPRRDDAAPATPRRRFGDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctcctatcatttcc
gccctgaccgatctgggctatgaaaaaccgtcaccgatccaggctgagtgtattcctcac
ctgttgaacggtcgcgatgtgctgggtatggcacaaaccggcagcggtaaaactgcggcg
ttctcgctgccactgctgcataacctcgacgcttccctgaaggcaccacagattctggtg
ctggccccgacccgcgaactggcggttcaggttgccgaagcgatgaccgatttctccaaa
cacatgaacggcgttaacgttgtggctctgtacggcggccagcgttacgacgtgcagctg
cgcgccctgcgccagggcccacaaatcgtagtgggtaccccgggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggtctggtgctggatgaagctgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcggaaataccggct
gaacatcagaccgcgctgttctccgctactatgccggaagcgattcgtcgcattacccgc
cgctttatgaaagagccgcaggaagtgcgcattcaatccagcatcactacccgtcctgac
atcagccagagctactggactgcacagggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagccgaagactttgatgcagccatcatcttcgtgcgtaccaaaaacgccacgctg
gaagtggccgaagcgctggagcgcagcggttacagcagcgccgcgctgaatggcgacatg
aaccaggcgctgcgtgagcagaccctggagcgtttgaaagacggtcgtctggatatcctg
attgctaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtagtcaac
tacgatatcccgatggattccgaatcttacgttcaccgtatcggccgtaccggtcgtgct
ggccgcgctggccgtgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
attgaacgcaccatgaagctgacgatccctgaggttgagctgccgaacgcagaactgctg
ggtcaacgccgtctggccaagttcgccgctaaggttcagcagcagctggaaagcagcgat
ctggatatgtaccgcgcgttgctggctaaactgcagccggaagaagagctggacatcgaa
acgctggcagcagcattgctgaagatggcacagggcgaacgtccactgatcctgccaccg
gatccggtgttcaaaccgcgtcaacgtcgtgaattcaacgaccgtgacgatcgcggcggt
gaccgtcgtcgtgatagccgtgacggcggtgagcgtccacagcgtcgcgaacgtcgtgac
gtgggtgaaatgcagctgtaccgcatcgaagtgggccgtgatgacggcgtggaagtgcgt
catatcgttggtgcgattgccaacgaaggcgacatcagcagccgttacatcggtaacatc
aagctgtttggttcccactccaccatcgaactgccaaaaggcatgccgggcgagatcctg
aatcacttcacgcgcacccgcattctgaacaagccgatgaatatgcaactgttgggcgat
gctcagccgcatgaacgtcgtgagcgtcgcgaaggcggtaacgccggtggcgaacgtcgc
ggcaacggtcgtcctttcaacggcgaacgtcgtgaaggcgcaccgcgtcgttctttcggc
gagcgtcgtgaaggcggaaatgcagccggtggcgaacgtcgtggcggtggtaacttcaac
cgtgaccgcgcaccgcgtcgtgacgatgcagcgccagccactccacgtcgtcgtttcggt
gacgcataa
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